Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010601A_C01 KMC010601A_c01
(433 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200914.2| histone deacetylase - like; protein id: At5g610... 60 6e-09
ref|NP_200913.1| putative protein; protein id: At5g61050.1 [Arab... 57 7e-08
dbj|BAC04594.1| unnamed protein product [Homo sapiens] 34 0.36
dbj|BAC30584.1| unnamed protein product [Mus musculus] 33 1.1
ref|NP_746886.1| sensor histidine kinase [Pseudomonas putida KT2... 32 1.8
>ref|NP_200914.2| histone deacetylase - like; protein id: At5g61060.1, supported by
cDNA: gi_20259319 [Arabidopsis thaliana]
gi|20259320|gb|AAM13986.1| putative histone deacetylase
[Arabidopsis thaliana] gi|21539579|gb|AAM53342.1|
histone deacetylase-like protein [Arabidopsis thaliana]
gi|23197730|gb|AAN15392.1| histone deacetylase-like
protein [Arabidopsis thaliana]
Length = 660
Score = 60.1 bits (144), Expect = 6e-09
Identities = 28/41 (68%), Positives = 36/41 (87%)
Frame = -3
Query: 431 FKSGKLPLRAPNKAYANTLIKGLVEGEQLSEDEAIAYIEAA 309
FKSG++P+R P KAYANTLI+GLVEG +LS++EA AYI+ A
Sbjct: 615 FKSGEIPIRPPAKAYANTLIRGLVEGGRLSKEEAEAYIDKA 655
>ref|NP_200913.1| putative protein; protein id: At5g61050.1 [Arabidopsis thaliana]
gi|9759452|dbj|BAB10368.1| gene_id:MAF19.6~unknown
protein [Arabidopsis thaliana]
Length = 252
Score = 56.6 bits (135), Expect = 7e-08
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = -3
Query: 431 FKSGKLPLRAPNKAYANTLIKGLVEGEQLSEDEAIAYIEAAA 306
FKSG++P+R P KAYANTLI+GLV+G + S +EA AYI+ AA
Sbjct: 207 FKSGEIPIRPPAKAYANTLIRGLVKGGRFSIEEAEAYIDNAA 248
>dbj|BAC04594.1| unnamed protein product [Homo sapiens]
Length = 134
Score = 34.3 bits (77), Expect = 0.36
Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 5/46 (10%)
Frame = -3
Query: 167 CAVLCMPRASAAF-YLLQCWCLY-CI---ICMYIYF*GIACICIFI 45
C +C S F Y+ C CLY C+ +CMY+Y C+C+ +
Sbjct: 47 CVFVCAHMCSCVFVYVCICVCLYVCVFVCVCMYVYLCVFVCMCLCV 92
>dbj|BAC30584.1| unnamed protein product [Mus musculus]
Length = 141
Score = 32.7 bits (73), Expect = 1.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 167 CAVLCMPRASAAFYLLQCWCLYCIICMYIYF*GIACICIFI 45
C +CM Y+ C C Y +C+YIY C+CI++
Sbjct: 50 CVYICM-----CVYI--CMCAYIYVCVYIYVCIYMCVCIYM 83
Score = 30.8 bits (68), Expect = 4.0
Identities = 12/41 (29%), Positives = 21/41 (50%)
Frame = -3
Query: 167 CAVLCMPRASAAFYLLQCWCLYCIICMYIYF*GIACICIFI 45
C +C+ Y+ C C+Y +C+YI C+CI++
Sbjct: 20 CIYMCV-----CIYIYICVCIYMCVCIYI------CVCIYV 49
Score = 30.4 bits (67), Expect = 5.3
Identities = 11/41 (26%), Positives = 21/41 (50%)
Frame = -3
Query: 167 CAVLCMPRASAAFYLLQCWCLYCIICMYIYF*GIACICIFI 45
C +C+ Y+ C C+Y +C+Y+ C+CI++
Sbjct: 92 CIYMCV-------YIYMCVCIYMYVCLYM------CVCIYV 119
Score = 30.4 bits (67), Expect = 5.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 116 CWCLYCIICMYIYF*GIACICIFI 45
C C+Y +C+YIY C+CI++
Sbjct: 18 CVCIYMCVCIYIYI----CVCIYM 37
>ref|NP_746886.1| sensor histidine kinase [Pseudomonas putida KT2440]
gi|24986538|gb|AAN70350.1|AE016677_1 sensor histidine
kinase [Pseudomonas putida KT2440]
Length = 662
Score = 32.0 bits (71), Expect = 1.8
Identities = 15/36 (41%), Positives = 25/36 (68%)
Frame = -2
Query: 129 LFASVLVPLLHHLHVYLFLRDCMYMYIYIL*VIPFG 22
++ +LV L+++L +YL +RD Y+Y YIL + FG
Sbjct: 189 IYGVLLVMLVYNLFIYLSVRDVSYLY-YILYIASFG 223
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,570,970
Number of Sequences: 1393205
Number of extensions: 7322604
Number of successful extensions: 18694
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 17532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18396
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
