Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010593A_C01 KMC010593A_c01
(663 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD48035.1|AF169204_1 differentially expressed osmotic protei... 83 3e-15
ref|NP_200853.1| auxin response transcription factor; protein id... 75 6e-13
emb|CAC83756.1| auxin response factor 1 [Oryza sativa (japonica ... 37 0.31
gb|AAG43286.2|AF140228_1 putative auxin response factor 1 [Oryza... 36 0.40
dbj|BAB85913.1| auxin response factor 2 [Oryza sativa] 36 0.53
>gb|AAD48035.1|AF169204_1 differentially expressed osmotic protein ODE2 [Capsicum annuum]
Length = 67
Score = 83.2 bits (204), Expect = 3e-15
Identities = 44/61 (72%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Frame = -3
Query: 556 EFCNVVSKIHIYTQEEVEKMTIGMMSDDTQSSLEQAP-LIMETSKSSSVCQPDSSPTVVR 380
EFC VVSKIHIYTQEEVEKMTI +SDDT S LE+AP M+ SKSSS+ QPDSS T +R
Sbjct: 7 EFCEVVSKIHIYTQEEVEKMTIQGISDDTHSCLEEAPAATMDVSKSSSIGQPDSSLTTIR 66
Query: 379 I 377
I
Sbjct: 67 I 67
>ref|NP_200853.1| auxin response transcription factor; protein id: At5g60450.1,
supported by cDNA: gi_12744968, supported by cDNA:
gi_19424050, supported by cDNA: gi_21280886, supported
by cDNA: gi_4102597 [Arabidopsis thaliana]
gi|4102598|gb|AAD01512.1| auxin response factor 4
[Arabidopsis thaliana] gi|9757747|dbj|BAB08228.1| auxin
response factor 4 [Arabidopsis thaliana]
gi|12744969|gb|AAK06864.1|AF344313_1 auxin response
factor 4 [Arabidopsis thaliana]
gi|19424051|gb|AAL87308.1| auxin response factor ARF4
[Arabidopsis thaliana] gi|21280887|gb|AAM45025.1| auxin
response factor ARF4 [Arabidopsis thaliana]
Length = 788
Score = 75.5 bits (184), Expect = 6e-13
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = -3
Query: 556 EFCNVVSKIHIYTQEEVEKMTIGMMSDDTQSSLEQAPLIMETSKSSSVCQPDSSPTVVRI 377
+FCNVV KIH+YT+EEVE +DD +S LEQA L+ME SKSSSV QPDSSPT+ R+
Sbjct: 734 DFCNVVWKIHLYTKEEVENA-----NDDNKSCLEQAALMMEASKSSSVSQPDSSPTITRV 788
>emb|CAC83756.1| auxin response factor 1 [Oryza sativa (japonica cultivar-group)]
Length = 836
Score = 36.6 bits (83), Expect = 0.31
Identities = 15/32 (46%), Positives = 24/32 (74%)
Frame = -3
Query: 556 EFCNVVSKIHIYTQEEVEKMTIGMMSDDTQSS 461
EFC++V KI IYT+EEV++M G ++ ++ S
Sbjct: 777 EFCDMVHKIFIYTREEVQRMNPGTLNSRSEDS 808
>gb|AAG43286.2|AF140228_1 putative auxin response factor 1 [Oryza sativa (indica
cultivar-group)]
Length = 857
Score = 36.2 bits (82), Expect = 0.40
Identities = 16/35 (45%), Positives = 27/35 (76%), Gaps = 3/35 (8%)
Frame = -3
Query: 556 EFCNVVSKIHIYTQEEVEKM---TIGMMSDDTQSS 461
EFC++V KI IYT+EEV++M T+ + S+D+ ++
Sbjct: 798 EFCDMVHKIFIYTREEVQRMNPGTLNLRSEDSHAN 832
>dbj|BAB85913.1| auxin response factor 2 [Oryza sativa]
Length = 791
Score = 35.8 bits (81), Expect = 0.53
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3
Query: 556 EFCNVVSKIHIYTQEEVEKM 497
EFC++V KI+IYT+EEV+KM
Sbjct: 744 EFCSIVRKIYIYTKEEVQKM 763
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,687,799
Number of Sequences: 1393205
Number of extensions: 12363950
Number of successful extensions: 42892
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 41122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42863
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
