Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010561A_C01 KMC010561A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63262.1| enhanced disease susceptibility 5 [Arabidopsis th... 129 3e-29
ref|NP_565509.1| expressed protein; protein id: At2g21340.1, sup... 129 3e-29
gb|AAL32655.1| Unknown protein [Arabidopsis thaliana] gi|2213623... 129 3e-29
ref|NP_195614.2| putative protein; protein id: At4g39030.1, supp... 119 4e-26
gb|AAL82672.1|AC092387_20 putative membrane protein [Oryza sativ... 37 0.14
>gb|AAM63262.1| enhanced disease susceptibility 5 [Arabidopsis thaliana]
Length = 555
Score = 129 bits (324), Expect = 3e-29
Identities = 59/105 (56%), Positives = 83/105 (78%), Gaps = 1/105 (0%)
Frame = -1
Query: 586 TSDQMVIQEMHRILIPYFVALSVTPTIVGLEGTMLAGRDLRFLSLSMIGCFLLNTVVLLT 407
T D++V EMH+++IPYF+ALS+TP+ LEGT+LAGRDLR++SLSM GC + ++L+
Sbjct: 444 TRDKVVTSEMHKVIIPYFLALSITPSTHSLEGTLLAGRDLRYISLSMTGCLAVAGLLLML 503
Query: 406 LSS-RYGLQGCWFALAGFQWTRFLSALLRLLSPNGILFSEDLGQY 275
LS+ +GL+GCW+AL GFQW RF +L RLLS +G+L+SED +Y
Sbjct: 504 LSNGGFGLRGCWYALVGFQWARFSLSLFRLLSRDGVLYSEDTSRY 548
>ref|NP_565509.1| expressed protein; protein id: At2g21340.1, supported by cDNA:
20834., supported by cDNA: gi_17065001 [Arabidopsis
thaliana] gi|20197910|gb|AAD23682.2| expressed protein
[Arabidopsis thaliana]
Length = 555
Score = 129 bits (324), Expect = 3e-29
Identities = 59/105 (56%), Positives = 83/105 (78%), Gaps = 1/105 (0%)
Frame = -1
Query: 586 TSDQMVIQEMHRILIPYFVALSVTPTIVGLEGTMLAGRDLRFLSLSMIGCFLLNTVVLLT 407
T D++V EMH+++IPYF+ALS+TP+ LEGT+LAGRDLR++SLSM GC + ++L+
Sbjct: 444 TRDKVVTSEMHKVIIPYFLALSITPSTHSLEGTLLAGRDLRYISLSMTGCLAVAGLLLML 503
Query: 406 LSS-RYGLQGCWFALAGFQWTRFLSALLRLLSPNGILFSEDLGQY 275
LS+ +GL+GCW+AL GFQW RF +L RLLS +G+L+SED +Y
Sbjct: 504 LSNGGFGLRGCWYALVGFQWARFSLSLFRLLSRDGVLYSEDTSRY 548
>gb|AAL32655.1| Unknown protein [Arabidopsis thaliana] gi|22136238|gb|AAM91197.1|
unknown protein [Arabidopsis thaliana]
Length = 559
Score = 129 bits (324), Expect = 3e-29
Identities = 59/105 (56%), Positives = 83/105 (78%), Gaps = 1/105 (0%)
Frame = -1
Query: 586 TSDQMVIQEMHRILIPYFVALSVTPTIVGLEGTMLAGRDLRFLSLSMIGCFLLNTVVLLT 407
T D++V EMH+++IPYF+ALS+TP+ LEGT+LAGRDLR++SLSM GC + ++L+
Sbjct: 448 TRDKVVTSEMHKVIIPYFLALSITPSTHSLEGTLLAGRDLRYISLSMTGCLAVAGLLLML 507
Query: 406 LSS-RYGLQGCWFALAGFQWTRFLSALLRLLSPNGILFSEDLGQY 275
LS+ +GL+GCW+AL GFQW RF +L RLLS +G+L+SED +Y
Sbjct: 508 LSNGGFGLRGCWYALVGFQWARFSLSLFRLLSRDGVLYSEDTSRY 552
>ref|NP_195614.2| putative protein; protein id: At4g39030.1, supported by cDNA:
gi_16589069 [Arabidopsis thaliana]
gi|20137881|sp|Q945F0|EDS5_ARATH Enhanced disease
susceptibility 5 (Eds5) (Salicylic acid induction
deficient 1) (Sid1) gi|16589070|gb|AAL27003.1|AF416569_1
enhanced disease susceptibility 5 [Arabidopsis thaliana]
Length = 543
Score = 119 bits (297), Expect = 4e-26
Identities = 59/112 (52%), Positives = 79/112 (69%), Gaps = 1/112 (0%)
Frame = -1
Query: 586 TSDQMVIQEMHRILIPYFVALSVTPTIVGLEGTMLAGRDLRFLSLSMIGCFLLNTVVLLT 407
T D+++I EMHR+LIP+F+ALS P V LEGT+LAGRDL+F+S M F++ + L+
Sbjct: 431 THDKVIISEMHRLLIPFFMALSALPMTVSLEGTLLAGRDLKFVSSVMSSSFIIGCLTLMF 490
Query: 406 LS-SRYGLQGCWFALAGFQWTRFLSALLRLLSPNGILFSEDLGQYELQKLKT 254
++ S YGL GCWF L GFQW RF L RLLSP GIL S+ Y ++K+K+
Sbjct: 491 VTRSGYGLLGCWFVLVGFQWGRFGLYLRRLLSPGGILNSDGPSPYTVEKIKS 542
>gb|AAL82672.1|AC092387_20 putative membrane protein [Oryza sativa (japonica cultivar-group)]
Length = 501
Score = 37.4 bits (85), Expect = 0.14
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = -1
Query: 586 TSDQMVIQEMHRILIPYFVALSVTPTIVGL----EGTMLAGRDLRFLSLSMIGCFLLNTV 419
T DQ V+ ++ + IP+ +S+T I L +G D + + SMI +++ +
Sbjct: 409 TDDQDVLHHIY-LGIPF---VSLTQPINALAFVFDGINYGASDFGYAAYSMILVAIVSII 464
Query: 418 VLLTLSSRYGLQGCWFALAGFQWTRFLSALLRL 320
++TL+S G G W AL + R L+ LR+
Sbjct: 465 FIVTLASYNGFVGIWIALTVYMSLRMLAGFLRI 497
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,853,057
Number of Sequences: 1393205
Number of extensions: 9757858
Number of successful extensions: 21791
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21786
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
