Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010553A_C01 KMC010553A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199201.1| putative protein; protein id: At5g43880.1 [Arab... 34 1.1
gb|EAA04234.1| ebiP5756 [Anopheles gambiae str. PEST] 34 1.4
dbj|BAC41406.2| mKIAA0289 protein [Mus musculus] 34 1.4
ref|NP_188996.1| unknown protein; protein id: At3g23540.1 [Arabi... 32 4.0
gb|AAL68676.1|AF463781_1 NADH dehydrogenase subunit 2 [Bufo poweri] 32 4.0
>ref|NP_199201.1| putative protein; protein id: At5g43880.1 [Arabidopsis thaliana]
gi|8953749|dbj|BAA98068.1|
gene_id:F6B6.2~pir||T04523~similar to unknown protein
[Arabidopsis thaliana] gi|22136044|gb|AAM91604.1|
putative protein [Arabidopsis thaliana]
Length = 836
Score = 34.3 bits (77), Expect = 1.1
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 558 SMRARIRYKISNLFGDSSKKYDTDQESSPITSSRDSRCSRSEANSPQSPLKASTLNSLSV 379
S++ ++ K+SN SKK ++ DSRC+ S + + S LS+
Sbjct: 506 SLKWSLKGKVSNFLFSRSKKASKERSYEESPEILDSRCNNEYDASVSARIMTSREGGLSI 565
Query: 378 TKPT 367
TKPT
Sbjct: 566 TKPT 569
>gb|EAA04234.1| ebiP5756 [Anopheles gambiae str. PEST]
Length = 1848
Score = 33.9 bits (76), Expect = 1.4
Identities = 29/102 (28%), Positives = 45/102 (43%), Gaps = 1/102 (0%)
Frame = -2
Query: 477 SPITSSRDSRCSRSEANSPQSPLKASTLNSLSVTKPTNLPFTIMRIMRHL*IMSSALISV 298
S I S DS + AS NSL +K + L + R+ M SA ++
Sbjct: 1550 SNIVSLADSSLGHEDFAMKNERQPASNRNSLRDSKNSPLSLSSQNSPRNSQYMQSAFLNP 1609
Query: 297 LSYKDAAGQGLGHEARIYQYSC-SLARYIG*LSLHGLRSYKF 175
+ A G G G +R+Y+ SC SL + + + L+ Y+F
Sbjct: 1610 TACDGAGGGGGGATSRLYKKSCESLQKNSSTDTEYSLQPYRF 1651
>dbj|BAC41406.2| mKIAA0289 protein [Mus musculus]
Length = 1249
Score = 33.9 bits (76), Expect = 1.4
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = -2
Query: 552 RARIRYKISNLFGDSSKKYDTDQESSPITSSRDSRCSRSEANSPQSPLKASTLNSLSVT 376
+AR N GDSS + + D + + T SR RS SP+SP+ +TL +SVT
Sbjct: 290 KARAGSAFLNPEGDSSTEAENDPQLTFYTDPSRSR-RRSRVGSPRSPVNKTTLTLISVT 347
>ref|NP_188996.1| unknown protein; protein id: At3g23540.1 [Arabidopsis thaliana]
Length = 568
Score = 32.3 bits (72), Expect = 4.0
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = -2
Query: 495 DTDQESSPITSSRDSRCSRSEANSPQSPLKASTLNSLSVTKPTNLP 358
+TD SSP+T S+D S SE+N P + T +SL+ T +++P
Sbjct: 479 ETDSASSPVTRSQDQLPSSSESNPP-----SETSSSLARTVTSSVP 519
>gb|AAL68676.1|AF463781_1 NADH dehydrogenase subunit 2 [Bufo poweri]
Length = 231
Score = 32.3 bits (72), Expect = 4.0
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -3
Query: 557 PCAHGYVTKFLIYSETVQKSMTLIRNLVLLHLLVTLVAHGRKLTVLNLP*KLVLST-P*V 381
P G++ K+LI E ++++MT+ ++LL L++L + R ++L LST P
Sbjct: 142 PPLTGFMPKWLIAQEMIKQNMTIFALVILLSTLLSLFFYLRLTYSMSLTLSPSLSTFPTT 201
Query: 380 LLNPP 366
NPP
Sbjct: 202 WFNPP 206
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,134,242
Number of Sequences: 1393205
Number of extensions: 7534926
Number of successful extensions: 15584
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15572
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
