Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010530A_C01 KMC010530A_c01
(485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182225.1| putative peptide chain release factor; protein ... 157 6e-38
ref|NP_539109.1| Bacterial Peptide Chain Release Factor 1 (RF-1)... 100 9e-21
sp|Q8YJ95|RF1_BRUME Peptide chain release factor 1 (RF-1) 100 9e-21
gb|ZP_00055449.1| hypothetical protein [Magnetospirillum magneto... 100 1e-20
ref|NP_698849.1| peptide chain release factor 1 [Brucella suis 1... 99 2e-20
>ref|NP_182225.1| putative peptide chain release factor; protein id: At2g47020.1
[Arabidopsis thaliana] gi|7443589|pir||T02185 probale
translation releasing factor RF-1 F14M4.15 - Arabidopsis
thaliana gi|3522941|gb|AAC34223.1| putative peptide
chain release factor [Arabidopsis thaliana]
Length = 395
Score = 157 bits (397), Expect = 6e-38
Identities = 74/91 (81%), Positives = 89/91 (97%)
Frame = -2
Query: 484 ALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSI 305
ALK+LCA+LYE+ERLR+ S+RSKLRS+QIGSGDRS RIRTYNFPQGRVTDHRVGIT+H+I
Sbjct: 304 ALKVLCARLYEIERLRIQSSRSKLRSDQIGSGDRSGRIRTYNFPQGRVTDHRVGITHHAI 363
Query: 304 DDVMQGENLDVFIDALLLREEMDAVASFTSS 212
+D+MQGENLD+FIDALLLR+EMDA+ASF+S+
Sbjct: 364 EDMMQGENLDMFIDALLLRQEMDAIASFSST 394
>ref|NP_539109.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Brucella
melitensis] gi|25299697|pir||AB3276 bacterial peptide
chain release factor 1 (RF-1) [imported] - Brucella
melitensis (strain 16M) gi|17982074|gb|AAL51373.1|
Bacterial Peptide Chain Release Factor 1 (RF-1)
[Brucella melitensis 16M]
Length = 377
Score = 100 bits (249), Expect = 9e-21
Identities = 48/77 (62%), Positives = 62/77 (80%)
Frame = -2
Query: 484 ALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSI 305
A++IL A+LY+MER + S RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 287 AMQILRARLYDMERQKAESERSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKL 346
Query: 304 DDVMQGENLDVFIDALL 254
D VM+GE LD +DAL+
Sbjct: 347 DRVMEGE-LDELVDALI 362
>sp|Q8YJ95|RF1_BRUME Peptide chain release factor 1 (RF-1)
Length = 359
Score = 100 bits (249), Expect = 9e-21
Identities = 48/77 (62%), Positives = 62/77 (80%)
Frame = -2
Query: 484 ALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSI 305
A++IL A+LY+MER + S RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 269 AMQILRARLYDMERQKAESERSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKL 328
Query: 304 DDVMQGENLDVFIDALL 254
D VM+GE LD +DAL+
Sbjct: 329 DRVMEGE-LDELVDALI 344
>gb|ZP_00055449.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 354
Score = 100 bits (248), Expect = 1e-20
Identities = 48/86 (55%), Positives = 63/86 (72%)
Frame = -2
Query: 484 ALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSI 305
ALK+L A+LYE ER + R+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + I
Sbjct: 266 ALKLLRARLYERERSAKDAERAAARKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKI 325
Query: 304 DDVMQGENLDVFIDALLLREEMDAVA 227
D VM G+ LD I+AL+ ++ + +A
Sbjct: 326 DAVMSGDALDELIEALVAADQAERLA 351
>ref|NP_698849.1| peptide chain release factor 1 [Brucella suis 1330]
gi|23348737|gb|AAN30764.1|AE014477_6 peptide chain
release factor 1 [Brucella suis 1330]
Length = 359
Score = 99.4 bits (246), Expect = 2e-20
Identities = 47/77 (61%), Positives = 62/77 (80%)
Frame = -2
Query: 484 ALKILCAKLYEMERLRLHSNRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSI 305
A++IL A+LY+MER + S RS+ R Q+GSGDRSERIRTYNFPQGRVTDHR+ +T + +
Sbjct: 269 AMQILRARLYDMERQKAESERSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKL 328
Query: 304 DDVMQGENLDVFIDALL 254
D VM+G+ LD +DAL+
Sbjct: 329 DRVMEGD-LDELVDALI 344
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 362,790,089
Number of Sequences: 1393205
Number of extensions: 6772540
Number of successful extensions: 13142
Number of sequences better than 10.0: 195
Number of HSP's better than 10.0 without gapping: 12931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13138
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
