Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010523A_C01 KMC010523A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO72370.1| hypothetical protein [Oryza sativa (japonica cult... 43 0.002
gb|AAM64440.1| unknown [Arabidopsis thaliana] 42 0.005
ref|NP_564749.1| bHLH protein; protein id: At1g59640.1, supporte... 42 0.005
pir||B96620 protein T30E16.21 [imported] - Arabidopsis thaliana ... 41 0.009
ref|NP_201067.1| putative protein; protein id: At5g62610.1, supp... 38 0.073
>gb|AAO72370.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 265
Score = 42.7 bits (99), Expect = 0.002
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = -3
Query: 499 KDVVTQPFDIA-GVIYESQAARGYAQGSHPG-WLHMQIGGGFEGAT 368
KD Q ++ A G+ ++ Q R YAQGS P WLHMQIGG +E T
Sbjct: 220 KDFGAQVYNTAPGLTFDPQTPREYAQGSTPSEWLHMQIGGTYERVT 265
>gb|AAM64440.1| unknown [Arabidopsis thaliana]
Length = 264
Score = 41.6 bits (96), Expect = 0.005
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = -3
Query: 499 KDVVTQPFDIAGVIYESQAARGYAQGSHPGWLHMQIG-GGFE 377
K+ Q F+ + + SQ+ R Y++G+ P WLHMQIG GGFE
Sbjct: 220 KEFGQQAFENPEIQFGSQSTREYSRGASPEWLHMQIGSGGFE 261
>ref|NP_564749.1| bHLH protein; protein id: At1g59640.1, supported by cDNA: 24644.
[Arabidopsis thaliana] gi|28393152|gb|AAO42009.1|
putative bHLH protein [Arabidopsis thaliana]
gi|28827506|gb|AAO50597.1| putative bHLH protein
[Arabidopsis thaliana]
Length = 264
Score = 41.6 bits (96), Expect = 0.005
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = -3
Query: 499 KDVVTQPFDIAGVIYESQAARGYAQGSHPGWLHMQIG-GGFE 377
K+ Q F+ + + SQ+ R Y++G+ P WLHMQIG GGFE
Sbjct: 220 KEFGQQAFENPEIQFGSQSTREYSRGASPEWLHMQIGSGGFE 261
>pir||B96620 protein T30E16.21 [imported] - Arabidopsis thaliana
gi|8778763|gb|AAF79771.1|AC009317_30 T30E16.21
[Arabidopsis thaliana]
Length = 348
Score = 40.8 bits (94), Expect = 0.009
Identities = 19/37 (51%), Positives = 26/37 (69%), Gaps = 1/37 (2%)
Frame = -3
Query: 484 QPFDIAGVIYESQAARGYAQGSHPGWLHMQIG-GGFE 377
Q F+ + + SQ+ R Y++G+ P WLHMQIG GGFE
Sbjct: 309 QAFENPEIQFGSQSTREYSRGASPEWLHMQIGSGGFE 345
>ref|NP_201067.1| putative protein; protein id: At5g62610.1, supported by cDNA:
112281., supported by cDNA: gi_18175778 [Arabidopsis
thaliana] gi|8809657|dbj|BAA97208.1| contains similarity
to DNA-binding protein~gene_id:MRG21.2 [Arabidopsis
thaliana] gi|18175779|gb|AAL59926.1| unknown protein
[Arabidopsis thaliana] gi|21536811|gb|AAM61143.1|
unknown [Arabidopsis thaliana]
gi|21689825|gb|AAM67556.1| unknown protein [Arabidopsis
thaliana]
Length = 281
Score = 37.7 bits (86), Expect = 0.073
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -3
Query: 496 DVVTQPFDIAGVIYESQAARGYAQGSHPGWLHMQIGGGFEGAT 368
D+ T P D+ IYE Q A + S P WLHMQ+ G F T
Sbjct: 240 DLGTLPIDVHRTIYEQQEANE-TRVSQPEWLHMQVDGNFNRTT 281
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,799,510
Number of Sequences: 1393205
Number of extensions: 9089736
Number of successful extensions: 17065
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17061
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
