Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010521A_C01 KMC010521A_c01
(443 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD38339.1|AF132899_1 unknown [Haemophilus influenzae] 32 1.4
gb|AAD38341.1|AF132900_1 unknown [Haemophilus influenzae] 32 1.4
gb|AAM92829.1| unknown protein [Oryza sativa (japonica cultivar-... 30 6.7
ref|NP_246314.1| unknown [Pasteurella multocida] gi|12721748|gb|... 30 6.7
gb|AAG13418.1|AC000348_15 T7N9.23 [Arabidopsis thaliana] 30 6.7
>gb|AAD38339.1|AF132899_1 unknown [Haemophilus influenzae]
Length = 76
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/38 (44%), Positives = 23/38 (59%)
Frame = -2
Query: 121 AIVFGDLITNSMLFLIGAILFSISCKLEFDMEMK*IFG 8
+I F L NS+ FL G +LF I C ++F E+K I G
Sbjct: 26 SIHFETLNNNSVRFLSGGLLFVIICLIKFRSELKKIIG 63
>gb|AAD38341.1|AF132900_1 unknown [Haemophilus influenzae]
Length = 137
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/38 (44%), Positives = 23/38 (59%)
Frame = -2
Query: 121 AIVFGDLITNSMLFLIGAILFSISCKLEFDMEMK*IFG 8
+I F L NS+ FL G +LF I C ++F E+K I G
Sbjct: 26 SIHFETLNNNSVRFLSGGLLFVIICLIKFRSELKKIIG 63
>gb|AAM92829.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 283
Score = 30.0 bits (66), Expect = 6.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +1
Query: 361 QACFPQKHSGLQLTY--FESQEVQPHFQ 438
Q+C PQ+ +GL Y +ESQ +PHF+
Sbjct: 67 QSCMPQRLAGLYCLYCLYESQPYKPHFK 94
>ref|NP_246314.1| unknown [Pasteurella multocida] gi|12721748|gb|AAK03459.1| unknown
[Pasteurella multocida]
Length = 303
Score = 30.0 bits (66), Expect = 6.7
Identities = 12/34 (35%), Positives = 17/34 (49%), Gaps = 5/34 (14%)
Frame = -1
Query: 434 KWG-----WTSCDSKYVN*RPECFCGKHACLTYF 348
+WG W + K V + C+CGKH C+ F
Sbjct: 154 EWGHNPLPWMDDEEKAVAQQTPCYCGKHGCIEQF 187
>gb|AAG13418.1|AC000348_15 T7N9.23 [Arabidopsis thaliana]
Length = 1560
Score = 30.0 bits (66), Expect = 6.7
Identities = 17/51 (33%), Positives = 23/51 (44%)
Frame = -1
Query: 410 SKYVN*RPECFCGKHACLTYFCNVSKLLLYF*PIEKLKGYISTSCHCLKLL 258
+K V+ C GKH L+ V L +F E LK I CH L+ +
Sbjct: 812 NKMVSFLLSCSMGKHIVLSQILTVKTFLCFFQVDENLKVVILRGCHSLEAI 862
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 371,821,705
Number of Sequences: 1393205
Number of extensions: 7249869
Number of successful extensions: 14593
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14589
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
