Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010473A_C01 KMC010473A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704004.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.0
ref|NP_473044.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.0
ref|NP_214940.1| hypothetical protein Rv0426c [Mycobacterium tub... 32 3.9
ref|NP_334850.1| hypothetical protein [Mycobacterium tuberculosi... 32 3.9
ref|NP_692426.1| primosomal replication factor Y [Oceanobacillus... 32 6.7
>ref|NP_704004.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498742|emb|CAD50812.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 3535
Score = 34.3 bits (77), Expect = 1.0
Identities = 30/106 (28%), Positives = 47/106 (44%)
Frame = +1
Query: 1 EKKNISNNFSRSRQNTINIIYQIRKKKLYKSNLDEKIRYQTI*TITHFLQKLKK*NHIDS 180
+K N+ N S + N N ++R + K N I+ Q+ F K NHI+
Sbjct: 653 KKSNLKNTSSLNNNNDNN---KVRTNYINKKN---DIKSQS------FHHKHTNVNHINY 700
Query: 181 HGQ*NRP*DRSKNLNGCNETQQSYFSFKRSST*TTFSVSHEFSDGS 318
H ++ N N CN T + FS K+SS ++ EF++ S
Sbjct: 701 HTY------KNINTNVCNNTNNNLFSKKKSSDDFVLYINEEFTEDS 740
>ref|NP_473044.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494302|pir||E71611 hypothetical protein PFB0580w -
malaria parasite (Plasmodium falciparum)
gi|3845222|gb|AAC71905.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1224
Score = 32.7 bits (73), Expect = 3.0
Identities = 18/64 (28%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Frame = +2
Query: 239 HSNPISVSNDPALEPRLAYHTSFQMAPSNSHMCNTACGEMVRNYSTMGCLNLSSPGS-KT 415
+SNP V+ + L L +++ + ++ N +C + +S CL+ S+P S T
Sbjct: 173 YSNPTEVNYNSLLSNNLKHNSLYYSFRKDTSNFNFSCDKNNTTFSKPNCLHESNPSSTST 232
Query: 416 CNPN 427
C PN
Sbjct: 233 CYPN 236
>ref|NP_214940.1| hypothetical protein Rv0426c [Mycobacterium tuberculosis H37Rv]
gi|7476353|pir||H70630 hypothetical protein Rv0426c -
Mycobacterium tuberculosis (strain H37RV)
gi|1817692|emb|CAB06566.1| hypothetical protein Rv0426c
[Mycobacterium tuberculosis H37Rv]
Length = 147
Score = 32.3 bits (72), Expect = 3.9
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = -3
Query: 288 KRGSSAGSFETEIGLLCLIATIEIFGAISWPVLLSMGVNVILL 160
++G S+GS T L I I + G + WP+LL++G +LL
Sbjct: 49 QKGLSSGSKSTAAAALA-IGAIGVAGLVDWPILLAVGGGALLL 90
>ref|NP_334850.1| hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|13879944|gb|AAK44664.1| hypothetical protein
[Mycobacterium tuberculosis CDC1551]
Length = 191
Score = 32.3 bits (72), Expect = 3.9
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = -3
Query: 288 KRGSSAGSFETEIGLLCLIATIEIFGAISWPVLLSMGVNVILL 160
++G S+GS T L I I + G + WP+LL++G +LL
Sbjct: 93 QKGLSSGSKSTAAAALA-IGAIGVAGLVDWPILLAVGGGALLL 134
>ref|NP_692426.1| primosomal replication factor Y [Oceanobacillus iheyensis HTE831]
gi|22777188|dbj|BAC13461.1| primosomal replication
factor Y [Oceanobacillus iheyensis]
Length = 802
Score = 31.6 bits (70), Expect = 6.7
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 134 LLTFCRN*KSKITLTPMDSRTGHEIAPKISMVAMR---HSNPISVSNDPALE 280
L +F R K+ TL + RT H+ PK+ +V MR H+ S+ + P +E
Sbjct: 429 LESFARASKNVYTLLTLQERTNHQTMPKVEIVDMRNELHAGNRSMFSRPLME 480
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,144,474
Number of Sequences: 1393205
Number of extensions: 9574996
Number of successful extensions: 23757
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23749
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
