Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010449A_C01 KMC010449A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86367 protein F26F24.24 [imported] - Arabidopsis thaliana ... 90 2e-17
ref|NP_173750.1| spore germination protein c2; protein id: At1g2... 88 7e-17
ref|ZP_00074037.1| hypothetical protein [Trichodesmium erythraeu... 68 1e-10
gb|ZP_00109310.1| hypothetical protein [Nostoc punctiforme] 66 4e-10
ref|NP_489292.1| probable methyltransferase [Nostoc sp. PCC 7120... 65 6e-10
>pir||F86367 protein F26F24.24 [imported] - Arabidopsis thaliana
gi|9295702|gb|AAF87008.1|AC005292_17 F26F24.24
[Arabidopsis thaliana]
Length = 333
Score = 89.7 bits (221), Expect = 2e-17
Identities = 44/64 (68%), Positives = 53/64 (82%)
Frame = -2
Query: 535 LIDNIVVPVASVYGLSEDYRYLKSSIREFLTGKELEELALEVGFSTARHYEISGGLMGCL 356
+IDN+VVPVA+VY L+++Y YLK SI +LTG+ELE LALE GFS+A HYEISGG MG L
Sbjct: 226 MIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNL 285
Query: 355 VAKR 344
VA R
Sbjct: 286 VAMR 289
>ref|NP_173750.1| spore germination protein c2; protein id: At1g23360.1 [Arabidopsis
thaliana]
Length = 281
Score = 88.2 bits (217), Expect = 7e-17
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = -2
Query: 535 LIDNIVVPVASVYGLSEDYRYLKSSIREFLTGKELEELALEVGFSTARHYEISGGLMGCL 356
+IDN+VVPVA+VY L+++Y YLK SI +LTG+ELE LALE GFS+A HYEISGG MG L
Sbjct: 195 MIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNL 254
Query: 355 VA 350
VA
Sbjct: 255 VA 256
>ref|ZP_00074037.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 233
Score = 67.8 bits (164), Expect = 1e-10
Identities = 31/60 (51%), Positives = 44/60 (72%)
Frame = -2
Query: 532 IDNIVVPVASVYGLSEDYRYLKSSIREFLTGKELEELALEVGFSTARHYEISGGLMGCLV 353
+D +VVPVAS GL+++Y Y+ S+ +FLTGK+ LA ++GF A+HY I GG+MG LV
Sbjct: 171 LDTVVVPVASNLGLTKEYAYISPSLTKFLTGKDQVALAYKLGFVNAKHYPIIGGMMGILV 230
>gb|ZP_00109310.1| hypothetical protein [Nostoc punctiforme]
Length = 230
Score = 65.9 bits (159), Expect = 4e-10
Identities = 31/66 (46%), Positives = 44/66 (65%)
Frame = -2
Query: 541 ELLIDNIVVPVASVYGLSEDYRYLKSSIREFLTGKELEELALEVGFSTARHYEISGGLMG 362
+L +++ VVPVA+ GL E+Y Y+ S+ F GKE ELA +VGF+ A HY I+ G+MG
Sbjct: 164 QLYLNSFVVPVANYLGLKEEYAYISPSLDRFPIGKEQIELARQVGFAVATHYPIANGMMG 223
Query: 361 CLVAKR 344
LV +
Sbjct: 224 VLVVSK 229
>ref|NP_489292.1| probable methyltransferase [Nostoc sp. PCC 7120]
gi|25305010|pir||AD2462 hypothetical protein alr5252
[imported] - Nostoc sp. (strain PCC 7120)
gi|17134391|dbj|BAB76951.1| ORF_ID:alr5252~probable
methyltransferase [Nostoc sp. PCC 7120]
Length = 229
Score = 65.1 bits (157), Expect = 6e-10
Identities = 29/63 (46%), Positives = 44/63 (69%)
Frame = -2
Query: 532 IDNIVVPVASVYGLSEDYRYLKSSIREFLTGKELEELALEVGFSTARHYEISGGLMGCLV 353
+D+IVVP+A G+ E+Y Y+ S+ F GKE E+AL+VGF++A HY I+ G+MG L+
Sbjct: 167 LDSIVVPLADRLGVKEEYAYISPSLDRFPIGKEQVEIALKVGFTSATHYPIANGMMGVLI 226
Query: 352 AKR 344
+
Sbjct: 227 ISK 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,885,257
Number of Sequences: 1393205
Number of extensions: 9055981
Number of successful extensions: 16140
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 15839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16135
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
