Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010424A_C01 KMC010424A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173072.1| putative protein phosphatase 2C; protein id: At... 51 3e-14
ref|NP_186924.1| protein phosphatase 2C (PP2C); protein id: At3g... 50 2e-13
gb|AAL32574.1| putative protein phosphatase-2C (PP2C) [Arabidops... 50 2e-13
dbj|BAB84698.1| protein phosphatase 2C [Arabidopsis thaliana] 50 2e-13
ref|NP_198474.1| protein phosphatase 2C PP2C; protein id: At5g36... 48 1e-12
>ref|NP_173072.1| putative protein phosphatase 2C; protein id: At1g16220.1
[Arabidopsis thaliana] gi|25518049|pir||B86297 F3O9.3
protein - Arabidopsis thaliana
gi|4966343|gb|AAD34674.1|AC006341_2 Is a member of
PF|00481 Protein phosphatase 2C family. [Arabidopsis
thaliana]
Length = 491
Score = 50.8 bits (120), Expect(2) = 3e-14
Identities = 27/46 (58%), Positives = 32/46 (68%), Gaps = 2/46 (4%)
Frame = -1
Query: 482 EEERVKLSKGKVFPLHNKLEVARVWLCNSDFPG--MARAFRDFSLR 351
E R+ KG+VF L ++ EVARVWL NSD PG MARAF DF L+
Sbjct: 249 ESARIHRCKGRVFALQDEPEVARVWLPNSDSPGLAMARAFGDFCLK 294
Score = 48.5 bits (114), Expect(2) = 3e-14
Identities = 20/35 (57%), Positives = 28/35 (79%)
Frame = -3
Query: 375 SF*RFFLKDYELIAVPDFSYHHLTEKDEFLVLVTD 271
+F F LKDY LI+VPD +YH LTE+D++++L TD
Sbjct: 287 AFGDFCLKDYGLISVPDINYHRLTERDQYIILATD 321
>ref|NP_186924.1| protein phosphatase 2C (PP2C); protein id: At3g02750.1, supported
by cDNA: gi_17064839 [Arabidopsis thaliana]
gi|6728987|gb|AAF26985.1|AC018363_30 putative protein
phosphatase-2C (PP2C) [Arabidopsis thaliana]
Length = 492
Score = 50.1 bits (118), Expect(2) = 2e-13
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = -1
Query: 494 NKVVEEERVKLSKGKVFPLHNKLEVARVWLCNSDFPG--MARAFRDFSLR 351
N E ER++ +G+VF L ++ EV RVWL N D PG MARAF DF L+
Sbjct: 262 NLPAEAERIRKCRGRVFALRDEPEVCRVWLPNCDSPGLAMARAFGDFCLK 311
Score = 47.0 bits (110), Expect(2) = 2e-13
Identities = 22/35 (62%), Positives = 27/35 (76%)
Frame = -3
Query: 375 SF*RFFLKDYELIAVPDFSYHHLTEKDEFLVLVTD 271
+F F LKD+ LI+VPD S+ LTEKDEF+VL TD
Sbjct: 304 AFGDFCLKDFGLISVPDVSFRQLTEKDEFIVLATD 338
>gb|AAL32574.1| putative protein phosphatase-2C (PP2C) [Arabidopsis thaliana]
Length = 492
Score = 50.1 bits (118), Expect(2) = 2e-13
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = -1
Query: 494 NKVVEEERVKLSKGKVFPLHNKLEVARVWLCNSDFPG--MARAFRDFSLR 351
N E ER++ +G+VF L ++ EV RVWL N D PG MARAF DF L+
Sbjct: 262 NLPAEAERIRKCRGRVFALRDEPEVCRVWLPNCDSPGLAMARAFGDFCLK 311
Score = 47.0 bits (110), Expect(2) = 2e-13
Identities = 22/35 (62%), Positives = 27/35 (76%)
Frame = -3
Query: 375 SF*RFFLKDYELIAVPDFSYHHLTEKDEFLVLVTD 271
+F F LKD+ LI+VPD S+ LTEKDEF+VL TD
Sbjct: 304 AFGDFCLKDFGLISVPDVSFRQLTEKDEFIVLATD 338
>dbj|BAB84698.1| protein phosphatase 2C [Arabidopsis thaliana]
Length = 302
Score = 50.1 bits (118), Expect(2) = 2e-13
Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = -1
Query: 494 NKVVEEERVKLSKGKVFPLHNKLEVARVWLCNSDFPG--MARAFRDFSLR 351
N E ER++ +G+VF L ++ EV RVWL N D PG MARAF DF L+
Sbjct: 72 NLPAEAERIRKCRGRVFALRDEPEVCRVWLPNCDSPGLAMARAFGDFCLK 121
Score = 47.0 bits (110), Expect(2) = 2e-13
Identities = 22/35 (62%), Positives = 27/35 (76%)
Frame = -3
Query: 375 SF*RFFLKDYELIAVPDFSYHHLTEKDEFLVLVTD 271
+F F LKD+ LI+VPD S+ LTEKDEF+VL TD
Sbjct: 114 AFGDFCLKDFGLISVPDVSFRQLTEKDEFIVLATD 148
>ref|NP_198474.1| protein phosphatase 2C PP2C; protein id: At5g36250.1, supported by
cDNA: gi_16974563 [Arabidopsis thaliana]
gi|9759038|dbj|BAB09365.1| protein phosphatase-2C
PP2C-like [Arabidopsis thaliana]
Length = 448
Score = 48.1 bits (113), Expect(2) = 1e-12
Identities = 23/35 (65%), Positives = 27/35 (76%)
Frame = -3
Query: 375 SF*RFFLKDYELIAVPDFSYHHLTEKDEFLVLVTD 271
+F F LKD+ LI+VPD SY LTEKDEF+VL TD
Sbjct: 295 AFGDFCLKDFGLISVPDVSYRRLTEKDEFVVLATD 329
Score = 45.8 bits (107), Expect(2) = 1e-12
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Frame = -1
Query: 482 EEERVKLSKGKVFPLHNKLEVARVWLCNSDFPG--MARAFRDFSLR 351
E ER+K +G++F L ++ VAR+WL N + PG MARAF DF L+
Sbjct: 257 EAERIKRCRGRIFALRDEPGVARLWLPNHNSPGLAMARAFGDFCLK 302
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,074,301
Number of Sequences: 1393205
Number of extensions: 7983659
Number of successful extensions: 18103
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 17530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18092
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
