Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010398A_C01 KMC010398A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564250.1| expressed protein; protein id: At1g26550.1, sup... 199 1e-50
ref|XP_228547.1| similar to protein (peptidyl-prolyl cis/trans i... 85 5e-16
ref|XP_135990.1| protein (peptidyl-prolyl cis/trans isomerase) N... 85 5e-16
gb|EAA07657.1| agCP1195 [Anopheles gambiae str. PEST] 85 6e-16
pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS... 84 1e-15
>ref|NP_564250.1| expressed protein; protein id: At1g26550.1, supported by cDNA:
14278., supported by cDNA: gi_12083235 [Arabidopsis
thaliana] gi|25366431|pir||E86392 hypothetical protein
T1K7.8 [imported] - Arabidopsis thaliana
gi|9797744|gb|AAF98562.1|AC013427_5 Contains similarity
to peptidyl-prolyl cis-trans isomerase EPVH from Homo
sapiens gb|AF143096 and contains a Rotamase (PPIC-type
PPIASE) PF|00639 domain. ESTs gb|T45176, gb|F14479,
gb|AA586142, gb|F14459, gb|AI997648 come from this gene.
[Arabidopsis thaliana]
gi|12083236|gb|AAG48777.1|AF332414_1 unknown protein
[Arabidopsis thaliana] gi|21553425|gb|AAM62518.1|
unknown [Arabidopsis thaliana]
Length = 142
Score = 199 bits (507), Expect = 1e-50
Identities = 92/96 (95%), Positives = 93/96 (96%)
Frame = -2
Query: 538 HILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAQEYSECPSGKKGGDLGWFPRGKM 359
H+LCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIA EYSECPSGKKGGDLGWFPRGKM
Sbjct: 47 HVLCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAAEYSECPSGKKGGDLGWFPRGKM 106
Query: 358 AGPFQDVAFNTVVGATSAPFKSTHGYHIILSEGRKN 251
AGPFQDVAFNT VG TSAPFKSTHGYHIILSEGRKN
Sbjct: 107 AGPFQDVAFNTPVGVTSAPFKSTHGYHIILSEGRKN 142
>ref|XP_228547.1| similar to protein (peptidyl-prolyl cis/trans isomerase)
NIMA-interacting, 4 (parvulin) [Mus musculus] [Rattus
norvegicus]
Length = 1401
Score = 85.1 bits (209), Expect = 5e-16
Identities = 47/101 (46%), Positives = 58/101 (56%), Gaps = 6/101 (5%)
Frame = -2
Query: 538 HILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAQEYSECPSGKKGGDLGWFPRGKM 359
HILCEK GKI EA +KL+ G F+++A +YSE ++GGDLGW RG M
Sbjct: 1312 HILCEKHGKIMEAMEKLKSGM----------RFSEVATQYSE-DKARQGGDLGWMTRGSM 1360
Query: 358 AGPFQDVAFNTVVGA------TSAPFKSTHGYHIILSEGRK 254
GPFQ+ AF V T P K+ GYHII+ EGRK
Sbjct: 1361 VGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 1401
>ref|XP_135990.1| protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4
(parvulin) [Mus musculus] gi|23617981|ref|XP_177113.1|
similar to protein (peptidyl-prolyl cis/trans isomerase)
NIMA-interacting, 4 (parvulin) [Mus musculus]
gi|20139149|sp|Q9CWW6|PIN4_MOUSE Peptidyl-prolyl
cis-trans isomerase NIMA-interacting 4 (Rotamase Pin4)
(PPIase Pin4) gi|12845707|dbj|BAB26863.1| unnamed
protein product [Mus musculus]
Length = 131
Score = 85.1 bits (209), Expect = 5e-16
Identities = 47/101 (46%), Positives = 58/101 (56%), Gaps = 6/101 (5%)
Frame = -2
Query: 538 HILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAQEYSECPSGKKGGDLGWFPRGKM 359
HILCEK GKI EA +KL+ G F+++A +YSE ++GGDLGW RG M
Sbjct: 42 HILCEKHGKIMEAMEKLKSGM----------RFSEVATQYSE-DKARQGGDLGWMTRGSM 90
Query: 358 AGPFQDVAFNTVVGA------TSAPFKSTHGYHIILSEGRK 254
GPFQ+ AF V T P K+ GYHII+ EGRK
Sbjct: 91 VGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131
>gb|EAA07657.1| agCP1195 [Anopheles gambiae str. PEST]
Length = 133
Score = 84.7 bits (208), Expect = 6e-16
Identities = 48/101 (47%), Positives = 59/101 (57%), Gaps = 6/101 (5%)
Frame = -2
Query: 538 HILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAQEYSECPSGKKGGDLGWFPRGKM 359
HILCEKQGKI EA +KL++G F +A YSE ++GGDLGW RG M
Sbjct: 44 HILCEKQGKIMEALEKLKEG----------QAFNVVATNYSE-DKARQGGDLGWQIRGAM 92
Query: 358 AGPFQDVAFNTVVGATSA------PFKSTHGYHIILSEGRK 254
GPFQD AF + T+A P K+ GYHII+ EG+K
Sbjct: 93 VGPFQDAAFALPISTTNAPKYTDPPIKTKFGYHIIMVEGKK 133
>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE,
Hpar14
Length = 104
Score = 84.0 bits (206), Expect = 1e-15
Identities = 47/101 (46%), Positives = 57/101 (55%), Gaps = 6/101 (5%)
Frame = -2
Query: 538 HILCEKQGKINEAYKKLQDGWLSNGDKVPPAEFAKIAQEYSECPSGKKGGDLGWFPRGKM 359
HILCEK GKI EA +KL+ G F ++A +YSE ++GGDLGW RG M
Sbjct: 15 HILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSE-DKARQGGDLGWMTRGSM 63
Query: 358 AGPFQDVAFNTVVGA------TSAPFKSTHGYHIILSEGRK 254
GPFQ+ AF V T P K+ GYHII+ EGRK
Sbjct: 64 VGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,928,138
Number of Sequences: 1393205
Number of extensions: 10415024
Number of successful extensions: 27233
Number of sequences better than 10.0: 230
Number of HSP's better than 10.0 without gapping: 26455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27178
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
