Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010313A_C01 KMC010313A_c01
(704 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565051.1| glycosyl hydrolase family 35 (beta-galactosidas... 94 2e-18
pir||C96755 Similar to acid beta-galactosidase [imported] - Arab... 86 4e-16
ref|NP_608978.2| CG9092-PA [Drosophila melanogaster] gi|21430516... 74 2e-12
ref|NP_650142.1| CG3132-PA [Drosophila melanogaster] gi|7299550|... 70 4e-11
gb|AAL27306.1|AF376481_1 BgaC [Carnobacterium piscicola] 64 3e-09
>ref|NP_565051.1| glycosyl hydrolase family 35 (beta-galactosidase); protein id:
At1g72990.1, supported by cDNA: gi_16648841 [Arabidopsis
thaliana] gi|16648842|gb|AAL25611.1| At1g72990/F3N23_19
[Arabidopsis thaliana] gi|22655360|gb|AAM98272.1|
At1g72990/F3N23_19 [Arabidopsis thaliana]
Length = 697
Score = 93.6 bits (231), Expect = 2e-18
Identities = 53/136 (38%), Positives = 67/136 (48%), Gaps = 2/136 (1%)
Frame = -2
Query: 697 QVKDTFISFNNWGKGIAFVNDFNIGRYWPVRGPPCHLYVPAPILKPGDNFLV*LAHSYYF 518
++KDT++SFN WGKG+AFVN+FNIGRYWP GP C+LYVPAP+LK G N LV
Sbjct: 613 EIKDTYLSFNGWGKGVAFVNEFNIGRYWPSVGPQCNLYVPAPLLKRGKNTLV-------- 664
Query: 517 ISSIYYLCILKPESVMGSKLL*VIASGVRIDSGEK*ADSNINI*VILELESPDPKLVVQT 338
+ ELESP +L ++
Sbjct: 665 ---------------------------------------------VFELESPHLELSLEA 679
Query: 337 VDEPNFTCGS--SEVN 296
VD +FTCGS S+VN
Sbjct: 680 VDHQDFTCGSNVSKVN 695
>pir||C96755 Similar to acid beta-galactosidase [imported] - Arabidopsis
thaliana gi|5903088|gb|AAD55646.1|AC008017_19 Similar to
acid beta-galactosidase [Arabidopsis thaliana]
Length = 616
Score = 86.3 bits (212), Expect = 4e-16
Identities = 34/47 (72%), Positives = 42/47 (89%)
Frame = -2
Query: 697 QVKDTFISFNNWGKGIAFVNDFNIGRYWPVRGPPCHLYVPAPILKPG 557
++KDT++SFN WGKG+AFVN+FNIGRYWP GP C+LYVPAP+LK G
Sbjct: 541 EIKDTYLSFNGWGKGVAFVNEFNIGRYWPSVGPQCNLYVPAPLLKRG 587
>ref|NP_608978.2| CG9092-PA [Drosophila melanogaster] gi|21430516|gb|AAM50936.1|
LP09580p [Drosophila melanogaster]
gi|22945722|gb|AAF52321.2| CG9092-PA [Drosophila
melanogaster]
Length = 672
Score = 73.9 bits (180), Expect = 2e-12
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = -2
Query: 700 SQVKDTFISFNNWGKGIAFVNDFNIGRYWPVRGPPCHLYVPAPILKPGDNFLV*LAH 530
++V DT+++ WGKG+A+VN FN+GRYWPV GP LYVP ILK G+N LV L +
Sbjct: 583 TEVGDTYLNMAGWGKGVAYVNGFNLGRYWPVAGPQVTLYVPNEILKVGENSLVILEY 639
>ref|NP_650142.1| CG3132-PA [Drosophila melanogaster] gi|7299550|gb|AAF54736.1|
CG3132-PA [Drosophila melanogaster]
gi|21429000|gb|AAM50219.1| HL01076p [Drosophila
melanogaster]
Length = 637
Score = 69.7 bits (169), Expect = 4e-11
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = -2
Query: 700 SQVKDTFISFNNWGKGIAFVNDFNIGRYWPVRGPPCHLYVPAPILKPGDNFLV 542
S + DT++ + WGKGI FVN N+GRYWP+ GP LYVPA +LK G N LV
Sbjct: 559 SDLADTYLDMSGWGKGIVFVNGENLGRYWPLVGPQVTLYVPAAVLKAGSNRLV 611
>gb|AAL27306.1|AF376481_1 BgaC [Carnobacterium piscicola]
Length = 586
Score = 63.5 bits (153), Expect = 3e-09
Identities = 29/49 (59%), Positives = 34/49 (69%)
Frame = -2
Query: 688 DTFISFNNWGKGIAFVNDFNIGRYWPVRGPPCHLYVPAPILKPGDNFLV 542
DTFI + WGKG+ FVN FN+GRYW VR P LY+P P LK G N L+
Sbjct: 514 DTFIDMSKWGKGVVFVNGFNLGRYWNVR-PQQKLYIPGPKLKVGVNELI 561
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 609,615,514
Number of Sequences: 1393205
Number of extensions: 13317446
Number of successful extensions: 30506
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 29513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30478
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
