Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010306A_C01 KMC010306A_c01
(465 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA94996.1| serine carboxypeptidase II-like protein [Arabido... 130 5e-30
ref|NP_188343.1| putative serine carboxypeptidase II; protein id... 130 5e-30
dbj|BAB86161.1| putative serine carboxypeptidase II-like protein... 115 2e-25
ref|NP_197712.1| serine carboxypeptidase II-like protein; protei... 103 7e-22
ref|NP_176308.1| hypothetical protein; protein id: At1g61130.1 [... 99 3e-20
>dbj|BAA94996.1| serine carboxypeptidase II-like protein [Arabidopsis thaliana]
Length = 472
Score = 130 bits (328), Expect = 5e-30
Identities = 62/82 (75%), Positives = 72/82 (87%), Gaps = 1/82 (1%)
Frame = -3
Query: 463 GDADGRVPVIGTRYCVEALGLPLKSNWRSWYLDNQVGGRIVEYE-GLTYVTVRGAGHLVP 287
GDADGRVPVIG+RYCVEALG+ +KS WRSW+ ++QVGGRI EYE GLT+VTVRGAGHLVP
Sbjct: 389 GDADGRVPVIGSRYCVEALGISVKSEWRSWFHNHQVGGRITEYEGGLTFVTVRGAGHLVP 448
Query: 286 LNKPKEALSLIHSFLAGDRLPT 221
LNKP+EAL+L SFL G LP+
Sbjct: 449 LNKPEEALALFRSFLNGQELPS 470
>ref|NP_188343.1| putative serine carboxypeptidase II; protein id: At3g17180.1
[Arabidopsis thaliana]
Length = 478
Score = 130 bits (328), Expect = 5e-30
Identities = 62/82 (75%), Positives = 72/82 (87%), Gaps = 1/82 (1%)
Frame = -3
Query: 463 GDADGRVPVIGTRYCVEALGLPLKSNWRSWYLDNQVGGRIVEYE-GLTYVTVRGAGHLVP 287
GDADGRVPVIG+RYCVEALG+ +KS WRSW+ ++QVGGRI EYE GLT+VTVRGAGHLVP
Sbjct: 395 GDADGRVPVIGSRYCVEALGISVKSEWRSWFHNHQVGGRITEYEGGLTFVTVRGAGHLVP 454
Query: 286 LNKPKEALSLIHSFLAGDRLPT 221
LNKP+EAL+L SFL G LP+
Sbjct: 455 LNKPEEALALFRSFLNGQELPS 476
>dbj|BAB86161.1| putative serine carboxypeptidase II-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 459
Score = 115 bits (288), Expect = 2e-25
Identities = 52/74 (70%), Positives = 64/74 (86%)
Frame = -3
Query: 439 VIGTRYCVEALGLPLKSNWRSWYLDNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPKEALS 260
VIG+RYCVEALGLP+KS W+ WYL+NQV GR VEY+GLT TVRGAGH VP +KP++AL
Sbjct: 383 VIGSRYCVEALGLPVKSQWQPWYLNNQVAGRFVEYQGLTMATVRGAGHAVPQDKPEQALV 442
Query: 259 LIHSFLAGDRLPTR 218
+I+SFL+G RLPT+
Sbjct: 443 VINSFLSGRRLPTK 456
>ref|NP_197712.1| serine carboxypeptidase II-like protein; protein id: At5g23210.1
[Arabidopsis thaliana] gi|10177810|dbj|BAB11176.1|
serine carboxypeptidase II-like protein [Arabidopsis
thaliana]
Length = 499
Score = 103 bits (258), Expect = 7e-22
Identities = 48/81 (59%), Positives = 57/81 (70%)
Frame = -3
Query: 463 GDADGRVPVIGTRYCVEALGLPLKSNWRSWYLDNQVGGRIVEYEGLTYVTVRGAGHLVPL 284
GD DGR+PV TRY ++ LGL + +W WY QVGG VEY+GL +VTVRGAGH VP
Sbjct: 416 GDTDGRIPVTATRYSLKKLGLKIVQDWTPWYTKLQVGGWTVEYDGLMFVTVRGAGHQVPT 475
Query: 283 NKPKEALSLIHSFLAGDRLPT 221
KP+EAL LIH FL +LPT
Sbjct: 476 FKPREALQLIHHFLGNKKLPT 496
>ref|NP_176308.1| hypothetical protein; protein id: At1g61130.1 [Arabidopsis
thaliana]
Length = 476
Score = 98.6 bits (244), Expect = 3e-20
Identities = 46/83 (55%), Positives = 55/83 (65%)
Frame = -3
Query: 463 GDADGRVPVIGTRYCVEALGLPLKSNWRSWYLDNQVGGRIVEYEGLTYVTVRGAGHLVPL 284
GD DGRVPV+ TRYC+ L LP+K+ WR WY + QV G EYEGLT+ T RGAGH VP
Sbjct: 394 GDTDGRVPVLSTRYCINKLELPIKTAWRPWYHETQVSGWFQEYEGLTFATFRGAGHDVPS 453
Query: 283 NKPKEALSLIHSFLAGDRLPTRR 215
KP E+L+ +FL G P R
Sbjct: 454 FKPSESLAFFSAFLNGVPPPLSR 476
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,232,784
Number of Sequences: 1393205
Number of extensions: 8670869
Number of successful extensions: 20386
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 19888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20320
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
