Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010249A_C01 KMC010249A_c01
(669 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178009.1| hypothetical protein; protein id: At1g78880.1, ... 212 4e-54
ref|NP_564009.1| expressed protein; protein id: At1g16860.1, sup... 205 4e-52
gb|AAM98245.1| unknown protein [Arabidopsis thaliana] 187 8e-47
ref|NP_193960.1| putative protein; protein id: At4g22290.1 [Arab... 127 1e-28
prf||2206359A knob-associated His-rich protein 35 3e-04
>ref|NP_178009.1| hypothetical protein; protein id: At1g78880.1, supported by cDNA:
gi_18176177, supported by cDNA: gi_20465702 [Arabidopsis
thaliana] gi|25372814|pir||C96818 hypothetical protein
F9K20.7 [imported] - Arabidopsis thaliana
gi|3834307|gb|AAC83023.1| Strong similarity to gene
T10I14.120 gi|2832679 putative protein from Arabidopsis
thaliana BAC gb|AL021712. ESTs gb|N65887 and gb|N65627
come from this gene gi|18176178|gb|AAL59998.1| unknown
protein [Arabidopsis thaliana]
gi|20465703|gb|AAM20320.1| unknown protein [Arabidopsis
thaliana] gi|21539479|gb|AAM53292.1| unknown protein
[Arabidopsis thaliana] gi|23198312|gb|AAN15683.1|
unknown protein [Arabidopsis thaliana]
Length = 468
Score = 212 bits (539), Expect = 4e-54
Identities = 102/130 (78%), Positives = 113/130 (86%)
Frame = -2
Query: 668 DFYISDFQSGLRALVKTGYGARVTPYVDDSIVIDVNPANKDMSPEFLRWLGDRKLSSDDR 489
DFYISDFQSGLRALVKTG GA+VTP VDDS+VID P N+ SP+F+RWLG + L++DDR
Sbjct: 339 DFYISDFQSGLRALVKTGNGAKVTPLVDDSVVIDFKPGNEQASPDFVRWLGKKNLTNDDR 398
Query: 488 IMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPLTTGCQWAKCIFPASLEGIVLRCE 309
IMRLKEGYIKEGSTVSV+GVVQRNDNVLMIVP EPL G QW+KC FPASLEGIVLRCE
Sbjct: 399 IMRLKEGYIKEGSTVSVIGVVQRNDNVLMIVPTTEPLAAGWQWSKCTFPASLEGIVLRCE 458
Query: 308 DTSKVDVIPV 279
D+S VD IPV
Sbjct: 459 DSSNVDAIPV 468
>ref|NP_564009.1| expressed protein; protein id: At1g16860.1, supported by cDNA:
gi_15292906 [Arabidopsis thaliana]
gi|25372815|pir||H86303 hypothetical protein F6I1.14
[imported] - Arabidopsis thaliana
gi|9802778|gb|AAF99847.1|AC051629_14 Unknown protein
[Arabidopsis thaliana] gi|15292907|gb|AAK92824.1|
unknown protein [Arabidopsis thaliana]
gi|21436333|gb|AAM51336.1| unknown protein [Arabidopsis
thaliana] gi|23397053|gb|AAN31812.1| unknown protein
[Arabidopsis thaliana]
Length = 474
Score = 205 bits (522), Expect = 4e-52
Identities = 99/130 (76%), Positives = 111/130 (85%)
Frame = -2
Query: 668 DFYISDFQSGLRALVKTGYGARVTPYVDDSIVIDVNPANKDMSPEFLRWLGDRKLSSDDR 489
DFYISDFQSGLRALVKTG GA+VTP VDDS+VID ++ +SP+F+RWLG + L+SDDR
Sbjct: 345 DFYISDFQSGLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDR 404
Query: 488 IMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPLTTGCQWAKCIFPASLEGIVLRCE 309
IMRLKEGYIKEGSTVSV+GVVQRNDNVLMIVP EPL G QW +C FP SLEGIVLRCE
Sbjct: 405 IMRLKEGYIKEGSTVSVIGVVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCE 464
Query: 308 DTSKVDVIPV 279
D+S VD IPV
Sbjct: 465 DSSNVDAIPV 474
>gb|AAM98245.1| unknown protein [Arabidopsis thaliana]
Length = 445
Score = 187 bits (476), Expect = 8e-47
Identities = 84/130 (64%), Positives = 107/130 (81%)
Frame = -2
Query: 668 DFYISDFQSGLRALVKTGYGARVTPYVDDSIVIDVNPANKDMSPEFLRWLGDRKLSSDDR 489
DFYISDFQSGLRALVK GYG++V+P+V + V +V NKD+SP FL+WL DR LS+DDR
Sbjct: 316 DFYISDFQSGLRALVKAGYGSKVSPFVKPATVANVTTQNKDLSPSFLKWLSDRNLSADDR 375
Query: 488 IMRLKEGYIKEGSTVSVMGVVQRNDNVLMIVPPPEPLTTGCQWAKCIFPASLEGIVLRCE 309
+MRLKEGYIKEGSTVSVMG+V+R+DNVLMIVPP E +++GC+W C+FP +G+++ C+
Sbjct: 376 VMRLKEGYIKEGSTVSVMGMVRRHDNVLMIVPPAEAVSSGCRWWHCLFPTYADGLIITCD 435
Query: 308 DTSKVDVIPV 279
D DVIPV
Sbjct: 436 DNQNADVIPV 445
>ref|NP_193960.1| putative protein; protein id: At4g22290.1 [Arabidopsis thaliana]
gi|7486824|pir||T04910 hypothetical protein T10I14.120 -
Arabidopsis thaliana gi|2832679|emb|CAA16779.1| putative
protein [Arabidopsis thaliana]
gi|7269075|emb|CAB79184.1| putative protein [Arabidopsis
thaliana]
Length = 974
Score = 127 bits (320), Expect = 1e-28
Identities = 64/115 (55%), Positives = 78/115 (67%), Gaps = 8/115 (6%)
Frame = -2
Query: 668 DFYISDFQSGLRALVKTGYGARVTPYVDDSIVIDVNPANKDMSPEFLRWLGDRKLSSDDR 489
DFYISDFQSGLRALVK GYG++V+P+V + V +V NKD+SP FL+WL DR LS+DDR
Sbjct: 316 DFYISDFQSGLRALVKAGYGSKVSPFVKPATVANVTTQNKDLSPSFLKWLSDRNLSADDR 375
Query: 488 IMRLKEGYIKEGSTVSVM--------GVVQRNDNVLMIVPPPEPLTTGCQWAKCI 348
+MRLKEGYIKEGSTVSVM GVV D + ++ P C K +
Sbjct: 376 VMRLKEGYIKEGSTVSVMGMCVIIFFGVVDAGDLLFRLITPERVFEASCSIRKIL 430
>prf||2206359A knob-associated His-rich protein
Length = 617
Score = 35.0 bits (79), Expect(2) = 3e-04
Identities = 22/77 (28%), Positives = 32/77 (40%)
Frame = +2
Query: 182 HHHHHHHHNQLLT*EEMFL*RRMPKRLPGRVTTLE*HQPSMYLRISKQYPQG*LEIYISP 361
HHHHHHHH+QL P++L G V ++P + ++ ++ G
Sbjct: 71 HHHHHHHHHQL-----------QPQQLQGTVANPPSNEPVVRTQVIREARPG-------- 111
Query: 362 IGIRSSKAQEEAQSSAH 412
KA EE S H
Sbjct: 112 ---GGFKAYEEKYESKH 125
Score = 30.8 bits (68), Expect(2) = 3e-04
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +2
Query: 95 LKQKKKYHRCKW*NHHTYQQDLCLQNTNNHHHHHHH 202
L QK+ H +HH +Q + Q + HHHHHH
Sbjct: 19 LAQKQHEHH----HHHHHQHEHQHQAPHQAHHHHHH 50
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 576,924,084
Number of Sequences: 1393205
Number of extensions: 12905345
Number of successful extensions: 71056
Number of sequences better than 10.0: 351
Number of HSP's better than 10.0 without gapping: 40480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58048
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
