Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010248A_C01 KMC010248A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65091.1| unknown [Arabidopsis thaliana] 114 6e-25
ref|NP_180669.1| hypothetical protein; protein id: At2g31110.1 [... 114 6e-25
gb|AAO42294.1| unknown protein [Arabidopsis thaliana] 114 6e-25
ref|NP_565975.1| expressed protein; protein id: At2g42570.1, sup... 110 6e-24
pir||G86412 F28N24.24 protein - Arabidopsis thaliana gi|9502431|... 110 1e-23
>gb|AAM65091.1| unknown [Arabidopsis thaliana]
Length = 364
Score = 114 bits (285), Expect = 6e-25
Identities = 50/78 (64%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
Frame = -3
Query: 491 FFGLKYPAGRPMAWTVVNKVLTRMSKPVYFLDVTTLSQYRKDAHPEGYSGVMA-TDCSHW 315
F G +YP G P+ W VVNKVL+R+ KPV+ LD+TTLS+YRKDAHP Y+G+ DCSHW
Sbjct: 286 FMGQRYPGGLPLGWVVVNKVLSRIRKPVHLLDLTTLSEYRKDAHPSLYNGISKDLDCSHW 345
Query: 314 CLPGLPDTWNELLAAALS 261
CLPGLPDTWN LL ++L+
Sbjct: 346 CLPGLPDTWNLLLYSSLT 363
>ref|NP_180669.1| hypothetical protein; protein id: At2g31110.1 [Arabidopsis
thaliana] gi|25408129|pir||F84716 hypothetical protein
At2g31110 [imported] - Arabidopsis thaliana
gi|3746073|gb|AAC63848.1| hypothetical protein
[Arabidopsis thaliana]
Length = 169
Score = 114 bits (285), Expect = 6e-25
Identities = 50/78 (64%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
Frame = -3
Query: 491 FFGLKYPAGRPMAWTVVNKVLTRMSKPVYFLDVTTLSQYRKDAHPEGYSGVMA-TDCSHW 315
F G +YP G P+ W VVNKVL+R+ KPV+ LD+TTLS+YRKDAHP Y+G+ DCSHW
Sbjct: 91 FMGQRYPGGLPLGWVVVNKVLSRIRKPVHLLDLTTLSEYRKDAHPSLYNGISKDLDCSHW 150
Query: 314 CLPGLPDTWNELLAAALS 261
CLPGLPDTWN LL ++L+
Sbjct: 151 CLPGLPDTWNLLLYSSLT 168
>gb|AAO42294.1| unknown protein [Arabidopsis thaliana]
Length = 357
Score = 114 bits (285), Expect = 6e-25
Identities = 50/78 (64%), Positives = 62/78 (79%), Gaps = 1/78 (1%)
Frame = -3
Query: 491 FFGLKYPAGRPMAWTVVNKVLTRMSKPVYFLDVTTLSQYRKDAHPEGYSGVMA-TDCSHW 315
F G +YP G P+ W VVNKVL+R+ KPV+ LD+TTLS+YRKDAHP Y+G+ DCSHW
Sbjct: 279 FMGQRYPGGLPLGWVVVNKVLSRIRKPVHLLDLTTLSEYRKDAHPSLYNGISKDLDCSHW 338
Query: 314 CLPGLPDTWNELLAAALS 261
CLPGLPDTWN LL ++L+
Sbjct: 339 CLPGLPDTWNLLLYSSLT 356
>ref|NP_565975.1| expressed protein; protein id: At2g42570.1, supported by cDNA:
17752., supported by cDNA: gi_14334589, supported by
cDNA: gi_17104518 [Arabidopsis thaliana]
gi|25366739|pir||E84855 hypothetical protein At2g42570
[imported] - Arabidopsis thaliana
gi|4559334|gb|AAD22996.1| expressed protein [Arabidopsis
thaliana] gi|14334590|gb|AAK59473.1| unknown protein
[Arabidopsis thaliana] gi|17104519|gb|AAL34148.1|
unknown protein [Arabidopsis thaliana]
Length = 367
Score = 110 bits (276), Expect = 6e-24
Identities = 48/77 (62%), Positives = 58/77 (74%), Gaps = 1/77 (1%)
Frame = -3
Query: 491 FFGLKYPAGRPMAWTVVNKVLTRMSKPVYFLDVTTLSQYRKDAHPEGYSG-VMATDCSHW 315
F+G KYP G PMAW ++NKV+ R+ KPV++LD+T LSQ RKDAHP +SG DCSHW
Sbjct: 288 FYGRKYPGGTPMAWVILNKVMRRLKKPVHWLDITGLSQLRKDAHPSAFSGNHPGNDCSHW 347
Query: 314 CLPGLPDTWNELLAAAL 264
CLPGLPDTWN L + L
Sbjct: 348 CLPGLPDTWNLLFYSTL 364
>pir||G86412 F28N24.24 protein - Arabidopsis thaliana
gi|9502431|gb|AAF88130.1|AC021043_23 Unknown protein
[Arabidopsis thaliana]
Length = 368
Score = 110 bits (274), Expect = 1e-23
Identities = 50/75 (66%), Positives = 58/75 (76%)
Frame = -3
Query: 485 GLKYPAGRPMAWTVVNKVLTRMSKPVYFLDVTTLSQYRKDAHPEGYSGVMATDCSHWCLP 306
G YP+G+P + VV+KVL+ M KPV LD+TTLSQ RKDAHP Y G TDCSHWCLP
Sbjct: 293 GSSYPSGQPPSSGVVSKVLSSMKKPVTLLDITTLSQLRKDAHPSSYGGDGGTDCSHWCLP 352
Query: 305 GLPDTWNELLAAALS 261
GLPDTWN+LL AAL+
Sbjct: 353 GLPDTWNQLLYAALT 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,764,027
Number of Sequences: 1393205
Number of extensions: 9691490
Number of successful extensions: 23719
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 23020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23655
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
