Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010192A_C01 KMC010192A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43364.1| unknown protein [Arabidopsis thaliana] 65 7e-10
dbj|BAA95791.1| wound inducive gene [Nicotiana tabacum] 44 0.001
dbj|BAB10410.1| gene_id:K2A18.12~unknown protein [Arabidopsis th... 44 0.001
ref|NP_201406.1| unknown protein; protein id: At5g66050.1 [Arabi... 39 0.032
gb|AAM65561.1| wound-responsive protein, putative [Arabidopsis t... 36 0.27
>dbj|BAC43364.1| unknown protein [Arabidopsis thaliana]
Length = 340
Score = 64.7 bits (156), Expect = 7e-10
Identities = 32/65 (49%), Positives = 46/65 (70%)
Frame = -2
Query: 552 LGYGMGGVLKKKATYDVLLDSPLDGPDVVAQELSMMRSMHTAIKMERFKDAAIWRDKLAN 373
+GYG G K ++V+LDS DGPD +++EL ++R+M A K ER+ DAA+WRD+L N
Sbjct: 262 IGYG-GRPQSAKPVFNVILDSAPDGPDPLSEELKLVRNMDLASKEERYIDAAMWRDRLKN 320
Query: 372 LRKSS 358
L+ SS
Sbjct: 321 LQNSS 325
>dbj|BAA95791.1| wound inducive gene [Nicotiana tabacum]
Length = 317
Score = 43.9 bits (102), Expect = 0.001
Identities = 20/48 (41%), Positives = 29/48 (59%)
Frame = -2
Query: 498 LDSPLDGPDVVAQELSMMRSMHTAIKMERFKDAAIWRDKLANLRKSSH 355
LD P P + A+E ++R+M A ER+ DAA+WRD+L LR +
Sbjct: 268 LDRPTGQPSIEAKEFILVRNMLVAAVEERYTDAALWRDQLMQLRSEKN 315
>dbj|BAB10410.1| gene_id:K2A18.12~unknown protein [Arabidopsis thaliana]
Length = 307
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = -2
Query: 552 LGYGMGGVLKKKATYDVLLDSPLDGPDVVAQELSMMRSMHTAIKMERFKDAA 397
+GYG G K ++V+LDS DGPD +++EL ++R+M A K ER+ D +
Sbjct: 240 IGYG-GRPQSAKPVFNVILDSAPDGPDPLSEELKLVRNMDLASKEERYIDCS 290
>ref|NP_201406.1| unknown protein; protein id: At5g66050.1 [Arabidopsis thaliana]
Length = 324
Score = 39.3 bits (90), Expect = 0.032
Identities = 20/46 (43%), Positives = 30/46 (64%)
Frame = -2
Query: 552 LGYGMGGVLKKKATYDVLLDSPLDGPDVVAQELSMMRSMHTAIKME 415
+GYG G K ++V+LDS DGPD +++EL ++R+M A K E
Sbjct: 262 IGYG-GRPQSAKPVFNVILDSAPDGPDPLSEELKLVRNMDLASKEE 306
>gb|AAM65561.1| wound-responsive protein, putative [Arabidopsis thaliana]
Length = 329
Score = 36.2 bits (82), Expect = 0.27
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -2
Query: 498 LDSPLDGPDVVAQELSMMRSMHTAIKMERFKDAAIWRDKLANLR 367
LD P P +E ++R+M A+ ER+ +AA WRDKL +
Sbjct: 277 LDRPNGQPCFDTKEFDLVRNMMQAVDEERYDEAAEWRDKLGKFQ 320
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,736,535
Number of Sequences: 1393205
Number of extensions: 8731909
Number of successful extensions: 17679
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17678
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
