Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010109A_C01 KMC010109A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q944A9|NS11_ARATH Novel plant SNARE 11 (AtNPSN11) gi|16612243... 59 3e-08
ref|NP_565800.1| expressed protein; protein id: At2g35190.1, sup... 59 3e-08
pir||F84765 hypothetical protein At2g35190 [imported] - Arabidop... 59 3e-08
ref|NP_175258.2| unknown protein; protein id: At1g48240.1, suppo... 52 6e-06
gb|AAM61208.1| unknown [Arabidopsis thaliana] 52 6e-06
>sp|Q944A9|NS11_ARATH Novel plant SNARE 11 (AtNPSN11)
gi|16612243|gb|AAL27494.1|AF439822_1 At2g35190/T4C15.14
[Arabidopsis thaliana] gi|23505837|gb|AAN28778.1|
At2g35190/T4C15.14 [Arabidopsis thaliana]
Length = 265
Score = 59.3 bits (142), Expect = 3e-08
Identities = 27/34 (79%), Positives = 31/34 (90%), Gaps = 2/34 (5%)
Frame = -1
Query: 516 IVKLVHPNNKDIRDIP--GLAPPVMNRRLLWSHH 421
IVK+V+PNNKDIRDIP GLAPP MNRRLLW+H+
Sbjct: 232 IVKIVNPNNKDIRDIPGVGLAPPAMNRRLLWNHY 265
>ref|NP_565800.1| expressed protein; protein id: At2g35190.1, supported by cDNA:
gi_16612242 [Arabidopsis thaliana]
gi|20197215|gb|AAC61818.2| expressed protein
[Arabidopsis thaliana]
Length = 265
Score = 59.3 bits (142), Expect = 3e-08
Identities = 27/34 (79%), Positives = 31/34 (90%), Gaps = 2/34 (5%)
Frame = -1
Query: 516 IVKLVHPNNKDIRDIP--GLAPPVMNRRLLWSHH 421
IVK+V+PNNKDIRDIP GLAPP MNRRLLW+H+
Sbjct: 232 IVKIVNPNNKDIRDIPGVGLAPPAMNRRLLWNHY 265
>pir||F84765 hypothetical protein At2g35190 [imported] - Arabidopsis thaliana
Length = 280
Score = 59.3 bits (142), Expect = 3e-08
Identities = 27/34 (79%), Positives = 31/34 (90%), Gaps = 2/34 (5%)
Frame = -1
Query: 516 IVKLVHPNNKDIRDIP--GLAPPVMNRRLLWSHH 421
IVK+V+PNNKDIRDIP GLAPP MNRRLLW+H+
Sbjct: 247 IVKIVNPNNKDIRDIPGVGLAPPAMNRRLLWNHY 280
>ref|NP_175258.2| unknown protein; protein id: At1g48240.1, supported by cDNA:
gi_19569610 [Arabidopsis thaliana]
gi|27805645|sp|Q9LNH6|NS12_ARATH Novel plant SNARE 12
(AtNPSN12) gi|8778508|gb|AAF79516.1|AC023673_4 F21D18.4
[Arabidopsis thaliana]
gi|19569611|gb|AAL92119.1|AF487545_1 NPSN12 [Arabidopsis
thaliana] gi|26449739|dbj|BAC41993.1| unknown protein
[Arabidopsis thaliana] gi|28950823|gb|AAO63335.1|
At1g48240 [Arabidopsis thaliana]
Length = 265
Score = 51.6 bits (122), Expect = 6e-06
Identities = 22/29 (75%), Positives = 27/29 (92%)
Frame = -1
Query: 516 IVKLVHPNNKDIRDIPGLAPPVMNRRLLW 430
IVK+V+PNNKDIRDIPGLAPP +R+LL+
Sbjct: 234 IVKIVNPNNKDIRDIPGLAPPAQSRKLLY 262
>gb|AAM61208.1| unknown [Arabidopsis thaliana]
Length = 268
Score = 51.6 bits (122), Expect = 6e-06
Identities = 22/29 (75%), Positives = 27/29 (92%)
Frame = -1
Query: 516 IVKLVHPNNKDIRDIPGLAPPVMNRRLLW 430
IVK+V+PNNKDIRDIPGLAPP +R+LL+
Sbjct: 233 IVKIVNPNNKDIRDIPGLAPPAQSRKLLY 261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,496,417
Number of Sequences: 1393205
Number of extensions: 9263567
Number of successful extensions: 21548
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21542
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
