Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010039A_C01 KMC010039A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM44307.1|AF512545_1 S-adenosylmethionine decarboxylase [x C... 160 9e-39
dbj|BAC55114.1| S-adenosylmethionine decarboxylase [Malus x dome... 158 6e-38
sp|Q96471|DCAM_PHANI S-adenosylmethionine decarboxylase proenzym... 152 2e-36
sp|Q9M6K1|DCAM_IPOBA S-adenosylmethionine decarboxylase proenzym... 148 5e-35
sp|Q42679|DCAM_CATRO S-adenosylmethionine decarboxylase proenzym... 143 2e-33
>gb|AAM44307.1|AF512545_1 S-adenosylmethionine decarboxylase [x Citrofortunella mitis]
Length = 361
Score = 160 bits (406), Expect = 9e-39
Identities = 79/117 (67%), Positives = 93/117 (78%), Gaps = 1/117 (0%)
Frame = -1
Query: 602 STIHVTPEDGFSYASFEAVGYDYEDLSLTELVERVLACFHPAEFSVALHMDMHG-EKLDK 426
STIHVTPEDGFSYASFEAVGYD+E + LT L+ERVLACF PAEFSVALH D+ G E D
Sbjct: 244 STIHVTPEDGFSYASFEAVGYDFEVVKLTSLLERVLACFKPAEFSVALHSDIVGDEHGDT 303
Query: 425 FPLDIEGYYCDKRGTEELGAGGAVMFHSFVRVDGCASPKSILKCCWSEDENDEEVKG 255
F LD +GY C ++ EELG G+++++SF R D SP+SILKCCWSEDE DEEV+G
Sbjct: 304 FTLDFKGYSCGEKIYEELGNNGSLIYYSFSRTDCSTSPRSILKCCWSEDEKDEEVEG 360
>dbj|BAC55114.1| S-adenosylmethionine decarboxylase [Malus x domestica]
Length = 374
Score = 158 bits (399), Expect = 6e-38
Identities = 81/120 (67%), Positives = 94/120 (77%), Gaps = 3/120 (2%)
Frame = -1
Query: 602 STIHVTPEDGFSYASFEAVGYDYEDLSLTELVERVLACFHPAEFSVALH-MDMHGEKLD- 429
STIHVTPEDGFSYASFE VGYD++D++LT+L+ RVL CF PAEFS+ALH GE LD
Sbjct: 250 STIHVTPEDGFSYASFETVGYDFKDVNLTQLLYRVLDCFKPAEFSIALHTTSTAGEDLDA 309
Query: 428 KFPLDIEGYYCDKRGTEELGAGGAVMFHSFVRVD-GCASPKSILKCCWSEDENDEEVKGI 252
K PLD++GY C E LG GGAVM+HSFV+ D G SP+SILKCCWSEDE DEEV+ I
Sbjct: 310 KCPLDLKGYCCGGSSYEGLGLGGAVMYHSFVKDDSGSQSPRSILKCCWSEDEKDEEVEEI 369
>sp|Q96471|DCAM_PHANI S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
gi|1498080|gb|AAC04611.1| S-adenosylmethionine
decarboxylase [Ipomoea nil]
Length = 362
Score = 152 bits (385), Expect = 2e-36
Identities = 71/116 (61%), Positives = 88/116 (75%), Gaps = 1/116 (0%)
Frame = -1
Query: 602 STIHVTPEDGFSYASFEAVGYDYEDLSLTELVERVLACFHPAEFSVALHMDMHGEKLDK- 426
STIHVTPEDGFSYASFEA+GYD++D++L L++RVL+CF PAEFSVALH D GEKLD
Sbjct: 244 STIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKLDSV 303
Query: 425 FPLDIEGYYCDKRGTEELGAGGAVMFHSFVRVDGCASPKSILKCCWSEDENDEEVK 258
F LD++GY C +R E LG GG++M+ F C SP+S L CCWSE+E+ E K
Sbjct: 304 FELDVKGYACGERSYEALGKGGSIMYCGFTSTGSCGSPRSTLLCCWSENEDQEGEK 359
>sp|Q9M6K1|DCAM_IPOBA S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
gi|7960047|gb|AAF71199.1|AF188998_1 S-adenosylmethionine
decarboxylase [Ipomoea batatas]
gi|22651884|gb|AAN03494.1|AF291761_2
S-adenosylmethionine decarboxylase [Ipomoea batatas]
Length = 362
Score = 148 bits (374), Expect = 5e-35
Identities = 69/116 (59%), Positives = 87/116 (74%), Gaps = 1/116 (0%)
Frame = -1
Query: 602 STIHVTPEDGFSYASFEAVGYDYEDLSLTELVERVLACFHPAEFSVALHMDMHGEKLDK- 426
S IHVTPEDGFSYASFEA+GYD++D++L L++RVL+CF PAEFSVALH D GEKLD
Sbjct: 244 SPIHVTPEDGFSYASFEAMGYDFKDVNLDALIQRVLSCFQPAEFSVALHCDSIGEKLDSV 303
Query: 425 FPLDIEGYYCDKRGTEELGAGGAVMFHSFVRVDGCASPKSILKCCWSEDENDEEVK 258
F LD++GY C +R E L GG++M+ F C SP+S L CCWSE+E++E K
Sbjct: 304 FKLDVKGYACGERSYEGLNKGGSIMYCGFTSTGSCGSPRSTLLCCWSENEDEEGEK 359
>sp|Q42679|DCAM_CATRO S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
[Contains: S-adenosylmethionine decarboxylase alpha
chain; S-adenosylmethionine decarboxylase beta chain]
gi|2129920|pir||S68990 adenosylmethionine decarboxylase
(EC 4.1.1.50) - Madagascar periwinkle
gi|758695|gb|AAC48989.1| S-adenosyl-L-methionine
decarboxylase proenzyme gi|1094441|prf||2106177A
Met(S-adenosyl) decarboxylase
Length = 357
Score = 143 bits (360), Expect = 2e-33
Identities = 65/114 (57%), Positives = 89/114 (78%), Gaps = 1/114 (0%)
Frame = -1
Query: 602 STIHVTPEDGFSYASFEAVGYDYEDLSLTELVERVLACFHPAEFSVALHMDMHGEKLDKF 423
STIHVTPEDGFSYASFEA GYD + +L ++ERVLACF P+EFSVA+H D+ + L++
Sbjct: 244 STIHVTPEDGFSYASFEAAGYDLKAQNLGMMIERVLACFQPSEFSVAVHCDVTCKSLEQI 303
Query: 422 -PLDIEGYYCDKRGTEELGAGGAVMFHSFVRVDGCASPKSILKCCWSEDENDEE 264
L+++ Y D++ EELG GG++++ F+R+D C SP+SILKCCW EDE++EE
Sbjct: 304 CSLELKEYSLDEKINEELGLGGSIIYKKFLRIDACGSPRSILKCCWKEDESEEE 357
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,452,373
Number of Sequences: 1393205
Number of extensions: 10608684
Number of successful extensions: 32286
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 30723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32158
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
