Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010028A_C01 KMC010028A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187580.1| unknown protein; protein id: At3g09690.1 [Arabi... 82 6e-15
ref|NP_195917.1| putative protein; protein id: At5g02970.1, supp... 80 2e-14
ref|NP_486746.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 33 3.2
>ref|NP_187580.1| unknown protein; protein id: At3g09690.1 [Arabidopsis thaliana]
gi|6682247|gb|AAF23299.1|AC016661_24 unknown protein
[Arabidopsis thaliana]
Length = 527
Score = 82.0 bits (201), Expect = 6e-15
Identities = 32/50 (64%), Positives = 42/50 (84%)
Frame = -3
Query: 641 YIERVLPEAVIHKLPNEGHFSYFFFCEKCHRQIFTTLFGIPQGPVERQEE 492
YI RV+PEA +H+LPNEGHFSYF+ C++CH QIF+ +FG P+GPVE E+
Sbjct: 454 YISRVIPEATVHRLPNEGHFSYFYLCDECHTQIFSAIFGEPKGPVELLEQ 503
>ref|NP_195917.1| putative protein; protein id: At5g02970.1, supported by cDNA:
gi_13605548 [Arabidopsis thaliana]
gi|11357915|pir||T48318 hypothetical protein F9G14.280 -
Arabidopsis thaliana gi|7413572|emb|CAB86051.1| putative
protein [Arabidopsis thaliana]
gi|13605549|gb|AAK32768.1|AF361600_1 AT5g02970/F9G14_280
[Arabidopsis thaliana]
Length = 514
Score = 80.5 bits (197), Expect = 2e-14
Identities = 32/51 (62%), Positives = 43/51 (83%)
Frame = -3
Query: 641 YIERVLPEAVIHKLPNEGHFSYFFFCEKCHRQIFTTLFGIPQGPVERQEET 489
YI R++PEA +HK+ NEGHFS+F+FC++CHRQIF LFG P+G +ER +ET
Sbjct: 451 YISRMIPEATVHKIRNEGHFSFFYFCDECHRQIFYALFGEPKGQLERVKET 501
>ref|NP_486746.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25530749|pir||AC2144
hypothetical protein all2706 [imported] - Nostoc sp.
(strain PCC 7120) gi|17131799|dbj|BAB74405.1|
ORF_ID:all2706~hypothetical protein [Nostoc sp. PCC
7120]
Length = 329
Score = 33.1 bits (74), Expect = 3.2
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 266 IVLTYISKSSYGPKFLGLM*CNEHSHLSSSNEQWSRLWNIYNQP 397
+VL I+ + GP +G++ + SH S+N W +LW++ P
Sbjct: 149 VVLFSITHNVIGPYGVGVLIASYFSHTKSTNRWWMQLWDLLTVP 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,163,284
Number of Sequences: 1393205
Number of extensions: 11026671
Number of successful extensions: 28919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28910
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
