Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010024A_C01 KMC010024A_c01
(748 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182283.1| 60S ribosomal protein L7A; protein id: At2g4761... 200 2e-50
ref|NP_191846.1| 60S RIBOSOMAL PROTEIN L7A protein; protein id: ... 199 3e-50
dbj|BAC22311.1| 60S ribosomal protein L7A [Oryza sativa (japonic... 195 7e-49
sp|P35685|RL7A_ORYSA 60S RIBOSOMAL PROTEIN L7A gi|542158|pir||S3... 195 7e-49
dbj|BAB90657.1| putative 60S ribosomal protein [Oryza sativa (ja... 194 9e-49
>ref|NP_182283.1| 60S ribosomal protein L7A; protein id: At2g47610.1, supported by
cDNA: 6394., supported by cDNA: gi_14326530, supported
by cDNA: gi_15450612 [Arabidopsis thaliana]
gi|6174956|sp|P49692|RL7A_ARATH 60S ribosomal protein
L7A gi|7440707|pir||T00423 ribosomal protein L7a,
cytosolic - Arabidopsis thaliana
gi|2529665|gb|AAC62850.1| 60S ribosomal protein L7A
[Arabidopsis thaliana]
gi|14326531|gb|AAK60310.1|AF385719_1 At2g47610/T30B22.8
[Arabidopsis thaliana] gi|15450613|gb|AAK96578.1|
At2g47610/T30B22.8 [Arabidopsis thaliana]
gi|21594006|gb|AAM65924.1| 60S ribosomal protein L7A
[Arabidopsis thaliana] gi|23308199|gb|AAN18069.1|
At2g47610/T30B22.8 [Arabidopsis thaliana]
Length = 257
Score = 200 bits (508), Expect = 2e-50
Identities = 94/104 (90%), Positives = 103/104 (98%)
Frame = -2
Query: 747 PIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAI 568
PIELVVWLPALCRKME+PYCIVKGK+RLG++VH+KTAS LCLT+VKNEDKLEFS++LEAI
Sbjct: 154 PIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAI 213
Query: 567 KANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVLAKEAAQRMN 436
KANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERV+AKEAAQRMN
Sbjct: 214 KANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQRMN 257
>ref|NP_191846.1| 60S RIBOSOMAL PROTEIN L7A protein; protein id: At3g62870.1,
supported by cDNA: 24272., supported by cDNA:
gi_15529279, supported by cDNA: gi_16974412, supported
by cDNA: gi_17065363 [Arabidopsis thaliana]
gi|11276721|pir||T48076 60S RIBOSOMAL PROTEIN L7A
protein - Arabidopsis thaliana
gi|7362767|emb|CAB83137.1| 60S RIBOSOMAL PROTEIN L7A
protein [Arabidopsis thaliana]
gi|15529280|gb|AAK97734.1| AT3g62870/F26K9_300
[Arabidopsis thaliana] gi|16974413|gb|AAL31132.1|
AT3g62870/F26K9_300 [Arabidopsis thaliana]
gi|17065364|gb|AAL32836.1| 60S RIBOSOMAL PROTEIN L7A
protein [Arabidopsis thaliana]
gi|21387165|gb|AAM47986.1| 60S ribosomal protein L7A
protein [Arabidopsis thaliana]
gi|21592470|gb|AAM64421.1| 60S RIBOSOMAL PROTEIN L7A
protein [Arabidopsis thaliana]
Length = 256
Score = 199 bits (506), Expect = 3e-50
Identities = 93/104 (89%), Positives = 103/104 (98%)
Frame = -2
Query: 747 PIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAI 568
PIELVVWLPALCRKME+PYCIVKGK+RLG++VH+KTA+ LCLT+VKNEDKLEFS++LEAI
Sbjct: 153 PIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAI 212
Query: 567 KANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVLAKEAAQRMN 436
KANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERV+AKEAAQRMN
Sbjct: 213 KANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQRMN 256
>dbj|BAC22311.1| 60S ribosomal protein L7A [Oryza sativa (japonica cultivar-group)]
Length = 306
Score = 195 bits (495), Expect = 7e-49
Identities = 92/103 (89%), Positives = 102/103 (98%)
Frame = -2
Query: 747 PIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAI 568
PIELVVWLPALCRKME+PYCIVKGKARLGSIVHKKTASVLCLT+VKNEDKLEFS++LEAI
Sbjct: 203 PIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAI 262
Query: 567 KANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVLAKEAAQRM 439
KANFNDK++E RKKWGGG+MGSKSQAKTKA+E++LAKEAAQRM
Sbjct: 263 KANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRM 305
>sp|P35685|RL7A_ORYSA 60S RIBOSOMAL PROTEIN L7A gi|542158|pir||S38360 ribosomal protein
L7a, cytosolic - rice gi|303855|dbj|BAA02156.1|
ribosomal protein L7A [Oryza sativa (japonica
cultivar-group)]
Length = 258
Score = 195 bits (495), Expect = 7e-49
Identities = 92/103 (89%), Positives = 102/103 (98%)
Frame = -2
Query: 747 PIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAI 568
PIELVVWLPALCRKME+PYCIVKGKARLGSIVHKKTASVLCLT+VKNEDKLEFS++LEAI
Sbjct: 155 PIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAI 214
Query: 567 KANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVLAKEAAQRM 439
KANFNDK++E RKKWGGG+MGSKSQAKTKA+E++LAKEAAQRM
Sbjct: 215 KANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRM 257
>dbj|BAB90657.1| putative 60S ribosomal protein [Oryza sativa (japonica
cultivar-group)] gi|20161929|dbj|BAB90840.1| putative
60S ribosomal protein [Oryza sativa (japonica
cultivar-group)]
Length = 308
Score = 194 bits (494), Expect = 9e-49
Identities = 93/103 (90%), Positives = 102/103 (98%)
Frame = -2
Query: 747 PIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTSVKNEDKLEFSRVLEAI 568
PIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLT+VKNEDKLEFS++LEAI
Sbjct: 205 PIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAI 264
Query: 567 KANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVLAKEAAQRM 439
K+NFNDK++E RKKWGGGIMGSKSQAKTKA+E++LAKEAAQRM
Sbjct: 265 KSNFNDKFDEVRKKWGGGIMGSKSQAKTKAREKLLAKEAAQRM 307
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 664,715,992
Number of Sequences: 1393205
Number of extensions: 14830024
Number of successful extensions: 44273
Number of sequences better than 10.0: 386
Number of HSP's better than 10.0 without gapping: 41343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44034
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
