Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009994A_C01 KMC009994A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564324.1| expressed protein; protein id: At1g29220.1, sup... 77 8e-20
gb|AAA67919.1| Saccharomyces cerevisiae Rev7p (REV7) gene, compl... 35 0.55
ref|NP_012126.1| involved in polarity establishment/cellular pol... 35 0.55
gb|AAK83884.1| Rev7p [Saccharomyces cerevisiae] 35 0.55
ref|NP_250116.1| probable ATP-binding component of ABC transport... 34 1.2
>ref|NP_564324.1| expressed protein; protein id: At1g29220.1, supported by cDNA:
20945. [Arabidopsis thaliana] gi|25518656|pir||F86414
hypothetical protein F28N24.10 [imported] - Arabidopsis
thaliana gi|9502418|gb|AAF88117.1|AC021043_10
Hypothetical protein [Arabidopsis thaliana]
Length = 351
Score = 76.6 bits (187), Expect(2) = 8e-20
Identities = 38/62 (61%), Positives = 51/62 (81%), Gaps = 1/62 (1%)
Frame = -2
Query: 375 VDGDRKNP-LPSGGQDAVSTVGSHAAMLSSANAGGGYMLFAQQKRREAEEKRSSERRLER 199
VDGD KNP L +G QD++S++ S+AA++S+ +AG GY FAQQ+RRE E +RSSER+LER
Sbjct: 290 VDGDVKNPPLAAGTQDSISSIRSNAALVSATSAGSGYSAFAQQRRREVEGRRSSERKLER 349
Query: 198 RS 193
RS
Sbjct: 350 RS 351
Score = 41.6 bits (96), Expect(2) = 8e-20
Identities = 21/49 (42%), Positives = 27/49 (54%)
Frame = -1
Query: 532 PGIAAGPPRISIPVAGASAATASGLHLVPPGADSINRDGRQNKKSKWDQ 386
PG + +IP+ G A SGL +P + RDGR NKKSKWD+
Sbjct: 243 PGAVFAAQKPNIPIPGIPALATSGLPSIP--TEIAARDGRPNKKSKWDK 289
>gb|AAA67919.1| Saccharomyces cerevisiae Rev7p (REV7) gene, complete cds
Length = 744
Score = 35.0 bits (79), Expect = 0.55
Identities = 31/104 (29%), Positives = 48/104 (45%), Gaps = 8/104 (7%)
Frame = +2
Query: 155 LVVFVTTNPNMAYDLLSNLLSLDLFSSASRRFCCANSMYPPPALAEDNIAA*DPTVDTAS 334
L++ VT N++YDL N + LD +S + N + P +A DN + S
Sbjct: 178 LIINVTDTGNVSYDLPLNYVYLDDDPISSDKLGSINLLDAPDWVALDNATI------SGS 231
Query: 335 CPPEGRGFFRSPS--------TYHSLVPF*FFVLSTIPIYRISS 442
P E G +P+ TY ++ F F V+ST ++ ISS
Sbjct: 232 VPDELLGKNSNPANFSVSIYDTYGDVIYFNFEVVSTTDLFAISS 275
>ref|NP_012126.1| involved in polarity establishment/cellular polarization during
budding; Axl2p [Saccharomyces cerevisiae]
gi|731878|sp|P38928|AXL2_YEAST AXL2 PROTEIN PRECURSOR
(SRO4 PROTEIN) gi|626316|pir||S48394 probable membrane
protein YIL140w - yeast (Saccharomyces cerevisiae)
gi|557783|emb|CAA86138.1| orf, len: 823, CAI: 0.16,
possible membrame protein [Saccharomyces cerevisiae]
gi|1293615|gb|AAA98666.1| Axl2p [Saccharomyces
cerevisiae]
Length = 823
Score = 35.0 bits (79), Expect = 0.55
Identities = 31/104 (29%), Positives = 48/104 (45%), Gaps = 8/104 (7%)
Frame = +2
Query: 155 LVVFVTTNPNMAYDLLSNLLSLDLFSSASRRFCCANSMYPPPALAEDNIAA*DPTVDTAS 334
L++ VT N++YDL N + LD +S + N + P +A DN + S
Sbjct: 257 LIINVTDTGNVSYDLPLNYVYLDDDPISSDKLGSINLLDAPDWVALDNATI------SGS 310
Query: 335 CPPEGRGFFRSPS--------TYHSLVPF*FFVLSTIPIYRISS 442
P E G +P+ TY ++ F F V+ST ++ ISS
Sbjct: 311 VPDELLGKNSNPANFSVSIYDTYGDVIYFNFEVVSTTDLFAISS 354
>gb|AAK83884.1| Rev7p [Saccharomyces cerevisiae]
Length = 775
Score = 35.0 bits (79), Expect = 0.55
Identities = 31/104 (29%), Positives = 48/104 (45%), Gaps = 8/104 (7%)
Frame = +2
Query: 155 LVVFVTTNPNMAYDLLSNLLSLDLFSSASRRFCCANSMYPPPALAEDNIAA*DPTVDTAS 334
L++ VT N++YDL N + LD +S + N + P +A DN + S
Sbjct: 257 LIINVTDTGNVSYDLPLNYVYLDDDPISSDKLGSINLLDAPDWVALDNATI------SGS 310
Query: 335 CPPEGRGFFRSPS--------TYHSLVPF*FFVLSTIPIYRISS 442
P E G +P+ TY ++ F F V+ST ++ ISS
Sbjct: 311 VPDELLGKNSNPANFSVSIYDTYGDVIYFNFEVVSTTDLFAISS 354
>ref|NP_250116.1| probable ATP-binding component of ABC transporter [Pseudomonas
aeruginosa PA01] gi|11351013|pir||H83466 probable
ATP-binding component of ABC transporter PA1425
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9947374|gb|AAG04814.1|AE004572_2 probable ATP-binding
component of ABC transporter [Pseudomonas aeruginosa
PAO1]
Length = 538
Score = 33.9 bits (76), Expect = 1.2
Identities = 16/30 (53%), Positives = 21/30 (69%), Gaps = 2/30 (6%)
Frame = -2
Query: 279 GGGYMLFAQQKR--REAEEKRSSERRLERR 196
GGGY +AQ + REA E+R +RRLER+
Sbjct: 221 GGGYSFYAQSREEAREAAERRLDQRRLERK 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,195,664
Number of Sequences: 1393205
Number of extensions: 10707226
Number of successful extensions: 31494
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31420
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
