Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009983A_C01 KMC009983A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193461.2| hypothetical protein; protein id: At4g17280.1, ... 145 4e-34
gb|AAL57706.1| AT4g17280/dl4675c [Arabidopsis thaliana] gi|27363... 145 4e-34
pir||H71441 hypothetical protein - Arabidopsis thaliana gi|22450... 139 2e-32
ref|NP_199564.1| putative protein; protein id: At5g47530.1 [Arab... 135 3e-31
emb|CAC37356.1| putative membrane protein [Solanum tuberosum] 122 2e-27
>ref|NP_193461.2| hypothetical protein; protein id: At4g17280.1, supported by cDNA:
gi_18086562 [Arabidopsis thaliana]
Length = 297
Score = 145 bits (366), Expect = 4e-34
Identities = 73/158 (46%), Positives = 112/158 (70%), Gaps = 5/158 (3%)
Frame = +1
Query: 106 MGENLMMARF---VLAISVLCSVFLT--SSAQTCNSQTFTNNKQFTSCRDLPHLTSYLHW 270
M ++ + +F +L +S++ S+ +T S AQTC+ F++N F SC DLP L S+LH+
Sbjct: 1 MSNHMSIMKFLNQILCLSLILSISMTTLSFAQTCSKYKFSSNNVFDSCNDLPFLDSFLHY 60
Query: 271 TFDQATGKLDIAFRHTGITSTDKWVSWAINPSSNLNSAMVGAQALVAIPQSSGSPKVYTT 450
T++ +TG L IA+RHT +TS KWV+WA+NP+S + MVGAQA+VA PQS G+ +VYT+
Sbjct: 61 TYESSTGSLHIAYRHTKLTS-GKWVAWAVNPTS---TGMVGAQAIVAYPQSDGTVRVYTS 116
Query: 451 SIANYDPNMAEGNISYPHTGLSATYSNSELTIYATLTL 564
I +Y ++ EG++S+ +GLSATY N+E+ + A+L L
Sbjct: 117 PIRSYQTSLLEGDLSFNVSGLSATYQNNEIVVLASLKL 154
>gb|AAL57706.1| AT4g17280/dl4675c [Arabidopsis thaliana] gi|27363428|gb|AAO11633.1|
At4g17280/dl4675c [Arabidopsis thaliana]
Length = 402
Score = 145 bits (366), Expect = 4e-34
Identities = 73/158 (46%), Positives = 112/158 (70%), Gaps = 5/158 (3%)
Frame = +1
Query: 106 MGENLMMARF---VLAISVLCSVFLT--SSAQTCNSQTFTNNKQFTSCRDLPHLTSYLHW 270
M ++ + +F +L +S++ S+ +T S AQTC+ F++N F SC DLP L S+LH+
Sbjct: 1 MSNHMSIMKFLNQILCLSLILSISMTTLSFAQTCSKYKFSSNNVFDSCNDLPFLDSFLHY 60
Query: 271 TFDQATGKLDIAFRHTGITSTDKWVSWAINPSSNLNSAMVGAQALVAIPQSSGSPKVYTT 450
T++ +TG L IA+RHT +TS KWV+WA+NP+S + MVGAQA+VA PQS G+ +VYT+
Sbjct: 61 TYESSTGSLHIAYRHTKLTS-GKWVAWAVNPTS---TGMVGAQAIVAYPQSDGTVRVYTS 116
Query: 451 SIANYDPNMAEGNISYPHTGLSATYSNSELTIYATLTL 564
I +Y ++ EG++S+ +GLSATY N+E+ + A+L L
Sbjct: 117 PIRSYQTSLLEGDLSFNVSGLSATYQNNEIVVLASLKL 154
>pir||H71441 hypothetical protein - Arabidopsis thaliana
gi|2245087|emb|CAB10509.1| hypothetical protein
[Arabidopsis thaliana] gi|7268480|emb|CAB78731.1|
hypothetical protein [Arabidopsis thaliana]
Length = 273
Score = 139 bits (351), Expect = 2e-32
Identities = 67/130 (51%), Positives = 96/130 (73%)
Frame = +1
Query: 175 SSAQTCNSQTFTNNKQFTSCRDLPHLTSYLHWTFDQATGKLDIAFRHTGITSTDKWVSWA 354
S AQTC+ F++N F SC DLP L S+LH+T++ +TG L IA+RHT +TS KWV+WA
Sbjct: 5 SFAQTCSKYKFSSNNVFDSCNDLPFLDSFLHYTYESSTGSLHIAYRHTKLTS-GKWVAWA 63
Query: 355 INPSSNLNSAMVGAQALVAIPQSSGSPKVYTTSIANYDPNMAEGNISYPHTGLSATYSNS 534
+NP+S + MVGAQA+VA PQS G+ +VYT+ I +Y ++ EG++S+ +GLSATY N+
Sbjct: 64 VNPTS---TGMVGAQAIVAYPQSDGTVRVYTSPIRSYQTSLLEGDLSFNVSGLSATYQNN 120
Query: 535 ELTIYATLTL 564
E+ + A+L L
Sbjct: 121 EIVVLASLKL 130
>ref|NP_199564.1| putative protein; protein id: At5g47530.1 [Arabidopsis thaliana]
gi|9758781|dbj|BAB09079.1|
gene_id:MNJ7.12~pir||H71441~similar to unknown protein
[Arabidopsis thaliana]
Length = 395
Score = 135 bits (341), Expect = 3e-31
Identities = 67/148 (45%), Positives = 101/148 (67%), Gaps = 1/148 (0%)
Frame = +1
Query: 127 ARFVLAISVLCSVFLTSS-AQTCNSQTFTNNKQFTSCRDLPHLTSYLHWTFDQATGKLDI 303
+ +L +S+ + S+ AQ C++ F+ N+ F SC DLP L S+LH+T+D ++G L I
Sbjct: 5 SNLLLCLSLFIFIITKSALAQKCSNYKFSTNRLFESCNDLPVLDSFLHYTYDSSSGNLQI 64
Query: 304 AFRHTGITSTDKWVSWAINPSSNLNSAMVGAQALVAIPQSSGSPKVYTTSIANYDPNMAE 483
A+RHT +T KWV+WA+NP+S + MVGAQA+VA PQS G+ + YT+ I++Y ++ E
Sbjct: 65 AYRHTKLTP-GKWVAWAVNPTS---TGMVGAQAIVAYPQSDGTVRAYTSPISSYQTSLLE 120
Query: 484 GNISYPHTGLSATYSNSELTIYATLTLP 567
+S+ + LSATY N+E+ IYA L LP
Sbjct: 121 AELSFNVSQLSATYQNNEMVIYAILNLP 148
>emb|CAC37356.1| putative membrane protein [Solanum tuberosum]
Length = 402
Score = 122 bits (307), Expect = 2e-27
Identities = 63/159 (39%), Positives = 92/159 (57%)
Frame = +1
Query: 106 MGENLMMARFVLAISVLCSVFLTSSAQTCNSQTFTNNKQFTSCRDLPHLTSYLHWTFDQA 285
M L+ + VL S+L ++F S Q C++ FTNN F++C LP L S+LHWT+
Sbjct: 1 MDTKLLTSNLVLFSSILLTLFTFSYGQNCSTHQFTNNNLFSTCNPLPVLNSFLHWTYHPD 60
Query: 286 TGKLDIAFRHTGITSTDKWVSWAINPSSNLNSAMVGAQALVAIPQSSGSPKVYTTSIANY 465
+D+A+RH G+T + WV+WA+N + M G Q+L+A SSG YT+ IA Y
Sbjct: 61 NHTVDLAYRHGGVTES-SWVAWALNLD---GTGMAGCQSLIAFRNSSGQIHAYTSPIAGY 116
Query: 466 DPNMAEGNISYPHTGLSATYSNSELTIYATLTLPSGTTS 582
+ EG +S+ +SA + SE+ I+ATL LP TS
Sbjct: 117 GTTLTEGALSFGVPRISAEFVRSEMIIFATLELPINRTS 155
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.316 0.127 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,318,625
Number of Sequences: 1393205
Number of extensions: 12910868
Number of successful extensions: 41855
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 39830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41781
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
