Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009982A_C01 KMC009982A_c01
(401 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42061.1| unknown protein [Arabidopsis thaliana] 31 4.2
ref|XP_240008.1| hypothetical protein XP_240008 [Rattus norvegicus] 30 5.5
>dbj|BAC42061.1| unknown protein [Arabidopsis thaliana]
Length = 540
Score = 30.8 bits (68), Expect = 4.2
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -3
Query: 399 IKIEERLASGARVIIQSSKP 340
IKI+ERLASGARV I+S P
Sbjct: 517 IKIDERLASGARVRIESKVP 536
>ref|XP_240008.1| hypothetical protein XP_240008 [Rattus norvegicus]
Length = 873
Score = 30.4 bits (67), Expect = 5.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 136 TPALLATSLCNESFSKYFHFIALWKCRMHLPTY 234
T +LL TSLC Y HF +K R+ P +
Sbjct: 15 TASLLGTSLCFRPLQPYIHFYGSYKARVSTPCW 47
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 324,776,664
Number of Sequences: 1393205
Number of extensions: 6069954
Number of successful extensions: 13595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13590
length of database: 448,689,247
effective HSP length: 109
effective length of database: 296,829,902
effective search space used: 7123917648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
