Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009961A_C01 KMC009961A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199030.1| expressed protein; protein id: At5g42150.1, sup... 172 3e-42
emb|CAD40201.1| OSJNBb0043H09.7 [Oryza sativa (japonica cultivar... 171 6e-42
ref|XP_231144.1| similar to prostaglandin E synthase 2; membrane... 99 6e-20
ref|NP_598544.1| prostaglandin E synthase 2 [Mus musculus] gi|13... 96 3e-19
dbj|BAC34345.1| unnamed protein product [Mus musculus] 96 3e-19
>ref|NP_199030.1| expressed protein; protein id: At5g42150.1, supported by cDNA:
4645., supported by cDNA: gi_20466186 [Arabidopsis
thaliana] gi|9757960|dbj|BAB08448.1| contains similarity
to
glutathione-S-transferase/glutaredoxin~gene_id:MJC20.26
[Arabidopsis thaliana] gi|20466187|gb|AAM20411.1|
putative protein [Arabidopsis thaliana]
gi|21593815|gb|AAM65782.1| unknown [Arabidopsis
thaliana] gi|24899835|gb|AAN65132.1| putative protein
[Arabidopsis thaliana]
Length = 315
Score = 172 bits (436), Expect = 3e-42
Identities = 83/96 (86%), Positives = 89/96 (92%)
Frame = -3
Query: 643 YAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALDGREFLGGSKPNFADLAVFGVL 464
YAGA AMYFVSKKLKKKYNITDERAALY+AAETWVDAL R +LGGSKPN DLAVFGVL
Sbjct: 219 YAGATAMYFVSKKLKKKYNITDERAALYDAAETWVDALKERPYLGGSKPNLGDLAVFGVL 278
Query: 463 RPIRYLRSGKDMVEHTRIGEWYTRMEDAVGEPSRIK 356
RPIRYLRSGKDMV++TRIGEWY+RME+ VGEPSRIK
Sbjct: 279 RPIRYLRSGKDMVDNTRIGEWYSRMENTVGEPSRIK 314
>emb|CAD40201.1| OSJNBb0043H09.7 [Oryza sativa (japonica cultivar-group)]
Length = 329
Score = 171 bits (434), Expect = 6e-42
Identities = 80/96 (83%), Positives = 90/96 (93%)
Frame = -3
Query: 643 YAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALDGREFLGGSKPNFADLAVFGVL 464
YAGAAAMY VSKKLKKKYNITD RA+LY+AA TW++ALDGR+FLGGSKPN ADLAVFGVL
Sbjct: 233 YAGAAAMYMVSKKLKKKYNITDARASLYDAANTWMEALDGRDFLGGSKPNLADLAVFGVL 292
Query: 463 RPIRYLRSGKDMVEHTRIGEWYTRMEDAVGEPSRIK 356
RPIRYL +GKDMVEHT+IG+WY RMEDA+GEPSRI+
Sbjct: 293 RPIRYLTAGKDMVEHTQIGDWYQRMEDAIGEPSRIQ 328
>ref|XP_231144.1| similar to prostaglandin E synthase 2; membrane-associated
prostaglandin E synthase 2; chromosome 9 open reading
frame 15; gamma-interferon-activated transcriptional
element (GATE) binding factor 1 [Homo sapiens] [Rattus
norvegicus]
Length = 384
Score = 98.6 bits (244), Expect = 6e-20
Identities = 50/95 (52%), Positives = 66/95 (68%), Gaps = 2/95 (2%)
Frame = -3
Query: 643 YAGAAAMYFVSKKLKKKYNITDE-RAALYEAAETWVDALD-GREFLGGSKPNFADLAVFG 470
Y GAAAMYF+SK+LK ++++ D+ R LYEAA WV A+ R F+GG KPN ADLAV+G
Sbjct: 279 YVGAAAMYFISKRLKSRHHLQDDVRVDLYEAANKWVTAVGKDRPFMGGQKPNLADLAVYG 338
Query: 469 VLRPIRYLRSGKDMVEHTRIGEWYTRMEDAVGEPS 365
VLR + L + D++ H+ I WY RME A+ E S
Sbjct: 339 VLRVMEGLEAFDDLMRHSHIQPWYLRMERAIKEAS 373
>ref|NP_598544.1| prostaglandin E synthase 2 [Mus musculus]
gi|13436035|gb|AAH04846.1| Similar to hypothetical
protein FLJ14038 [Mus musculus]
Length = 384
Score = 96.3 bits (238), Expect = 3e-19
Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Frame = -3
Query: 643 YAGAAAMYFVSKKLKKKYNITDE-RAALYEAAETWVDALD-GREFLGGSKPNFADLAVFG 470
Y GAAAMY +SK+LK ++++ D+ R LYEAA WV A+ R F+GG KPN ADLAV+G
Sbjct: 279 YVGAAAMYLISKRLKSRHHLQDDVRVDLYEAANKWVTAVGKDRPFMGGQKPNLADLAVYG 338
Query: 469 VLRPIRYLRSGKDMVEHTRIGEWYTRMEDAVGE-PSRIKA*TGCQD 335
VLR + L + D++ H+ I WY RME A+ E PS C+D
Sbjct: 339 VLRVMEGLEAFDDLMRHSHIQPWYLRMERAIEEAPSVHHVNPSCKD 384
>dbj|BAC34345.1| unnamed protein product [Mus musculus]
Length = 384
Score = 96.3 bits (238), Expect = 3e-19
Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 3/106 (2%)
Frame = -3
Query: 643 YAGAAAMYFVSKKLKKKYNITDE-RAALYEAAETWVDALD-GREFLGGSKPNFADLAVFG 470
Y GAAAMY +SK+LK ++++ D+ R LYEAA WV A+ R F+GG KPN ADLAV+G
Sbjct: 279 YVGAAAMYLISKRLKSRHHLQDDVRVDLYEAANKWVTAVGKDRPFMGGQKPNLADLAVYG 338
Query: 469 VLRPIRYLRSGKDMVEHTRIGEWYTRMEDAVGE-PSRIKA*TGCQD 335
VLR + L + D++ H+ I WY RME A+ E PS C+D
Sbjct: 339 VLRVMEGLEAFDDLMRHSHIQPWYLRMERAIEEAPSVHHVNPSCKD 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 609,998,964
Number of Sequences: 1393205
Number of extensions: 14583912
Number of successful extensions: 35951
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 34434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35890
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
