Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009939A_C01 KMC009939A_c01
(370 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_269752.1| putative ABC transporter (permease) [Streptococ... 32 1.5
emb|CAD20318.1| putative potassium transporter [Cymodocea nodosa] 30 7.6
ref|NP_607766.1| putative ABC transporter (permease) [Streptococ... 30 7.6
ref|NP_758330.1| conserved hypothetical protein [Mycoplasma pene... 30 9.9
>ref|NP_269752.1| putative ABC transporter (permease) [Streptococcus pyogenes]
gi|21911038|ref|NP_665306.1| putative ABC transporter
(permease) [Streptococcus pyogenes MGAS315]
gi|28895277|ref|NP_801627.1| putative ABC transporter
(permease) [Streptococcus pyogenes SSI-1]
gi|13622782|gb|AAK34473.1| putative ABC transporter
(permease) [Streptococcus pyogenes M1 GAS]
gi|21905247|gb|AAM80109.1| putative ABC transporter
(permease) [Streptococcus pyogenes MGAS315]
gi|28810523|dbj|BAC63460.1| putative ABC transporter
(permease) [Streptococcus pyogenes SSI-1]
Length = 344
Score = 32.3 bits (72), Expect = 1.5
Identities = 23/49 (46%), Positives = 30/49 (60%), Gaps = 2/49 (4%)
Frame = -1
Query: 154 ITYRRYSELVTTSSFMLWGPTQT--LLFLTWLC*DLHLHAFIFVIKVLI 14
I+Y + +E + SF+LWG QT LLFL + L L FIF+I VLI
Sbjct: 94 ISYIKQAERL---SFLLWGTLQTAVLLFLYPIFRRLGLSLFIFIILVLI 139
>emb|CAD20318.1| putative potassium transporter [Cymodocea nodosa]
Length = 773
Score = 30.0 bits (66), Expect = 7.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 187 LSIIHGRWL*VPIILPLSIYIXIFFTWHSGTLSK 288
+ + G W VP+ L S++I + + WH GTL K
Sbjct: 474 IKFLQGAW--VPVALS-SVFILVMYIWHYGTLKK 504
>ref|NP_607766.1| putative ABC transporter (permease) [Streptococcus pyogenes
MGAS8232] gi|19748849|gb|AAL98265.1| putative ABC
transporter (permease) [Streptococcus pyogenes MGAS8232]
Length = 344
Score = 30.0 bits (66), Expect = 7.6
Identities = 22/49 (44%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Frame = -1
Query: 154 ITYRRYSELVTTSSFMLWGPTQT--LLFLTWLC*DLHLHAFIFVIKVLI 14
I+Y + +E + SF+LWG QT LLFL + L L IF+I VLI
Sbjct: 94 ISYIKQAERL---SFLLWGTLQTAVLLFLYPIFRRLGLSLLIFIILVLI 139
>ref|NP_758330.1| conserved hypothetical protein [Mycoplasma penetrans]
gi|26454406|dbj|BAC44734.1| conserved hypothetical
protein [Mycoplasma penetrans]
Length = 261
Score = 29.6 bits (65), Expect = 9.9
Identities = 18/44 (40%), Positives = 23/44 (51%)
Frame = +1
Query: 136 YTFYT*SHN*KQHEKKSLSIIHGRWL*VPIILPLSIYIXIFFTW 267
YT Y N K H K+L +I G WL I P S YI +++W
Sbjct: 211 YTVYGDFTNLKDHLGKALPVILGMWL---IFFPGS-YIAFYYSW 250
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 276,175,251
Number of Sequences: 1393205
Number of extensions: 5058983
Number of successful extensions: 8984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8972
length of database: 448,689,247
effective HSP length: 98
effective length of database: 312,155,157
effective search space used: 7491723768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
