Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009912A_C01 KMC009912A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22705.1| unknown protein [Arabidopsis thaliana] gi|2839397... 159 2e-38
ref|NP_175931.1| unknown protein; protein id: At1g55340.1 [Arabi... 158 5e-38
ref|NP_187038.1| hypothetical protein; protein id: At3g03880.1 [... 146 2e-34
gb|AAM20602.1| putative protein [Arabidopsis thaliana] gi|231981... 107 7e-23
ref|NP_567597.1| putative protein; protein id: At4g20300.1, supp... 107 7e-23
>gb|AAO22705.1| unknown protein [Arabidopsis thaliana] gi|28393971|gb|AAO42393.1|
unknown protein [Arabidopsis thaliana]
Length = 193
Score = 159 bits (403), Expect = 2e-38
Identities = 80/128 (62%), Positives = 101/128 (78%), Gaps = 6/128 (4%)
Frame = -3
Query: 545 NRKSASPEKEDRYYTTRGSAEDTGKVTGDVNLGEEKA-----FVWPKLYITLSSQEKEED 381
+R+ SPEKE+RYYTTRG ++ GK D N+ E + +WPKL+ITLS++EKEED
Sbjct: 66 DRRRPSPEKEERYYTTRGVVDNIGKDCLDGNINGEDSNNKEESMWPKLFITLSNKEKEED 125
Query: 380 FLAMKGCKLPQRPKKRAKIIQRTLLLVSPGAWLTDMCQERYEVREKKSNKK-RPRGLKAM 204
F+AMKGCK RPKKRAK+IQR+LLLVSPG WL D+C +RY+VR KKS+KK R RGLKAM
Sbjct: 126 FMAMKGCKPSHRPKKRAKLIQRSLLLVSPGTWLADLCPDRYDVRVKKSSKKRRARGLKAM 185
Query: 203 GSMESDSE 180
G+ME+DS+
Sbjct: 186 GNMETDSD 193
>ref|NP_175931.1| unknown protein; protein id: At1g55340.1 [Arabidopsis thaliana]
gi|25405821|pir||F96595 unknown protein, 25817-24837
[imported] - Arabidopsis thaliana
gi|12323172|gb|AAG51568.1|AC027034_14 unknown protein;
25817-24837 [Arabidopsis thaliana]
Length = 243
Score = 158 bits (399), Expect = 5e-38
Identities = 77/107 (71%), Positives = 93/107 (85%), Gaps = 2/107 (1%)
Frame = -3
Query: 533 ASPEKEDRYYTTRGSA--EDTGKVTGDVNLGEEKAFVWPKLYITLSSQEKEEDFLAMKGC 360
ASPEKEDRYYTTRGS +++GK+ + + E K VWPKLYI LS++EKEEDFLAMKGC
Sbjct: 87 ASPEKEDRYYTTRGSMGIDESGKIIKEP-VKETKKHVWPKLYIALSNKEKEEDFLAMKGC 145
Query: 359 KLPQRPKKRAKIIQRTLLLVSPGAWLTDMCQERYEVREKKSNKKRPR 219
KLPQRPKKRAK++Q+TLLLVSPGAWL+D+C+ERYEVREKK++KK R
Sbjct: 146 KLPQRPKKRAKLVQKTLLLVSPGAWLSDLCKERYEVREKKTSKKTKR 192
>ref|NP_187038.1| hypothetical protein; protein id: At3g03880.1 [Arabidopsis
thaliana] gi|6006854|gb|AAF00630.1|AC009540_7
hypothetical protein [Arabidopsis thaliana]
Length = 217
Score = 146 bits (368), Expect = 2e-34
Identities = 80/152 (52%), Positives = 101/152 (65%), Gaps = 30/152 (19%)
Frame = -3
Query: 545 NRKSASPEKEDRYYTTRGSAEDTGKVTGDVNLGEEKA-----FVWPKLYITLSSQEKEED 381
+R+ SPEKE+RYYTTRG ++ GK D N+ E + +WPKL+ITLS++EKEED
Sbjct: 66 DRRRPSPEKEERYYTTRGVVDNIGKDCLDGNINGEDSNNKEESMWPKLFITLSNKEKEED 125
Query: 380 FLAMKGCKLPQRPKKRAKIIQRTLL------------------------LVSPGAWLTDM 273
F+AMKGCK RPKKRAK+IQR+LL LVSPG WL D+
Sbjct: 126 FMAMKGCKPSHRPKKRAKLIQRSLLKSVLKILQLSVYSFENNVLSDFKQLVSPGTWLADL 185
Query: 272 CQERYEVREKKSNKK-RPRGLKAMGSMESDSE 180
C +RY+VR KKS+KK R RGLKAMG+ME+DS+
Sbjct: 186 CPDRYDVRVKKSSKKRRARGLKAMGNMETDSD 217
>gb|AAM20602.1| putative protein [Arabidopsis thaliana] gi|23198140|gb|AAN15597.1|
putative protein [Arabidopsis thaliana]
Length = 352
Score = 107 bits (268), Expect = 7e-23
Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Frame = -3
Query: 524 EKEDRYYTTRGSAEDTGKVTGDVNLGEEKAFV-WPKLYITLSSQEKEEDFLAMKGCKLPQ 348
+++ R + G ++N EKA WP++YI LS +EKEEDFL MKG KLP
Sbjct: 235 QQQQHQRVNRSESTAQGHQEVEINGEREKATQEWPRIYIALSRKEKEEDFLVMKGTKLPH 294
Query: 347 RPKKRAKIIQRTLLLVSPGAWLTDMCQERYEVREKKSNKK--RPRGLKAMGSMESDSE 180
RP+KRAK I + L PG WL+D+ + RYEVREKK+ KK + RGLK M +M++DSE
Sbjct: 295 RPRKRAKNIDKALQFCFPGMWLSDLTKNRYEVREKKNVKKQQKRRGLKGMENMDTDSE 352
>ref|NP_567597.1| putative protein; protein id: At4g20300.1, supported by cDNA:
18947. [Arabidopsis thaliana]
Length = 174
Score = 107 bits (268), Expect = 7e-23
Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Frame = -3
Query: 524 EKEDRYYTTRGSAEDTGKVTGDVNLGEEKAFV-WPKLYITLSSQEKEEDFLAMKGCKLPQ 348
+++ R + G ++N EKA WP++YI LS +EKEEDFL MKG KLP
Sbjct: 57 QQQQHQRVNRSESTAQGHQEVEINGEREKATQEWPRIYIALSRKEKEEDFLVMKGTKLPH 116
Query: 347 RPKKRAKIIQRTLLLVSPGAWLTDMCQERYEVREKKSNKK--RPRGLKAMGSMESDSE 180
RP+KRAK I + L PG WL+D+ + RYEVREKK+ KK + RGLK M +M++DSE
Sbjct: 117 RPRKRAKNIDKALQFCFPGMWLSDLTKNRYEVREKKNVKKQQKRRGLKGMENMDTDSE 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,832,453
Number of Sequences: 1393205
Number of extensions: 10322939
Number of successful extensions: 37056
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 32629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36236
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
