Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009910A_C01 KMC009910A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173159.1| putative ribokinase; protein id: At1g17160.1 [A... 88 7e-17
pir||F86307 hypothetical protein F20D23.14 - Arabidopsis thalian... 88 7e-17
dbj|BAB63548.1| P0003E08.15 [Oryza sativa (japonica cultivar-gro... 86 2e-16
gb|ZP_00122257.1| hypothetical protein [Haemophilus somnus 129PT] 53 2e-06
ref|NP_391473.1| ribokinase [Bacillus subtilis] gi|3915836|sp|P3... 49 3e-05
>ref|NP_173159.1| putative ribokinase; protein id: At1g17160.1 [Arabidopsis thaliana]
Length = 379
Score = 87.8 bits (216), Expect = 7e-17
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = -2
Query: 519 TFTAAFAVXIVEGKSXKECLRFAAAAASLCVQVKGAMPSMPDRKSVLDLL 370
TFTAAFAV +VEGKS +ECLRFAAAAASLCVQVKGA+PSMPDRKSVL LL
Sbjct: 326 TFTAAFAVAMVEGKSHEECLRFAAAAASLCVQVKGAIPSMPDRKSVLKLL 375
>pir||F86307 hypothetical protein F20D23.14 - Arabidopsis thaliana
gi|5734752|gb|AAD50017.1|AC007651_12 Similar to
ribokinase [Arabidopsis thaliana]
Length = 378
Score = 87.8 bits (216), Expect = 7e-17
Identities = 44/50 (88%), Positives = 47/50 (94%)
Frame = -2
Query: 519 TFTAAFAVXIVEGKSXKECLRFAAAAASLCVQVKGAMPSMPDRKSVLDLL 370
TFTAAFAV +VEGKS +ECLRFAAAAASLCVQVKGA+PSMPDRKSVL LL
Sbjct: 325 TFTAAFAVAMVEGKSHEECLRFAAAAASLCVQVKGAIPSMPDRKSVLKLL 374
>dbj|BAB63548.1| P0003E08.15 [Oryza sativa (japonica cultivar-group)]
Length = 447
Score = 86.3 bits (212), Expect = 2e-16
Identities = 41/50 (82%), Positives = 47/50 (94%)
Frame = -2
Query: 519 TFTAAFAVXIVEGKSXKECLRFAAAAASLCVQVKGAMPSMPDRKSVLDLL 370
TFT+AFAV +VEGK +EC+RFAAAAASLCVQVKGA+PSMPDRKSV+DLL
Sbjct: 377 TFTSAFAVALVEGKPKEECMRFAAAAASLCVQVKGAIPSMPDRKSVMDLL 426
>gb|ZP_00122257.1| hypothetical protein [Haemophilus somnus 129PT]
Length = 317
Score = 52.8 bits (125), Expect = 2e-06
Identities = 25/53 (47%), Positives = 34/53 (63%)
Frame = -2
Query: 519 TFTAAFAVXIVEGKSXKECLRFAAAAASLCVQVKGAMPSMPDRKSVLDLLSCH 361
TF AF ++E KS E +RFA AAA++ V +GA PS+P R+ LD L+ H
Sbjct: 265 TFNGAFLTALLENKSLDEAIRFAHAAAAISVTRQGAQPSIPTRRETLDFLAQH 317
>ref|NP_391473.1| ribokinase [Bacillus subtilis] gi|3915836|sp|P36945|RBSK_BACSU
Ribokinase gi|7427979|pir||D69690 ribokinase (EC
2.7.1.15) - Bacillus subtilis gi|1894761|emb|CAB07465.1|
ribokinase [Bacillus subtilis]
gi|2636117|emb|CAB15609.1| ribokinase [Bacillus subtilis
subsp. subtilis str. 168]
Length = 293
Score = 49.3 bits (116), Expect = 3e-05
Identities = 28/51 (54%), Positives = 31/51 (59%)
Frame = -2
Query: 519 TFTAAFAVXIVEGKSXKECLRFAAAAASLCVQVKGAMPSMPDRKSVLDLLS 367
TF AAFAV + EGK + LRFA AASL V GA MP R V +LLS
Sbjct: 243 TFNAAFAVALAEGKDIEAALRFANRAASLSVCSFGAQGGMPTRNEVEELLS 293
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,482,642
Number of Sequences: 1393205
Number of extensions: 8258134
Number of successful extensions: 17368
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 16937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17357
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
