Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009900A_C01 KMC009900A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567940.1| Expressed protein; protein id: At4g33905.1, sup... 147 1e-34
ref|NP_179092.1| 22 kDa peroxisomal membrane protein; protein id... 143 1e-33
ref|NP_568621.1| putative protein; protein id: At5g43140.1, supp... 126 2e-28
gb|AAM62733.1| contains similarity to 22 kDa peroxisomal membran... 126 2e-28
pir||T05218 hypothetical protein F17I5.90 - Arabidopsis thaliana... 106 2e-22
>ref|NP_567940.1| Expressed protein; protein id: At4g33905.1, supported by cDNA:
gi_13358221 [Arabidopsis thaliana]
gi|11762212|gb|AAG40384.1|AF325032_1 AT4g33900
[Arabidopsis thaliana]
Length = 261
Score = 147 bits (370), Expect = 1e-34
Identities = 70/88 (79%), Positives = 75/88 (84%)
Frame = -3
Query: 521 YGPAMTVIFFSFNAHLQGETGTEIVARLKRDLLPTFLSGVMYWPLCDFITFRFIPVHLQP 342
YGPAM V+FFS NA LQGE G+EIVARLKRDLLPT L+GVMYWPLCDFITF+F PV+LQP
Sbjct: 174 YGPAMNVVFFSLNAALQGENGSEIVARLKRDLLPTMLNGVMYWPLCDFITFKFCPVYLQP 233
Query: 341 LVSNSFSYLWTIYITYMASLEKAEIAEI 258
LVSNSFSYLWTIYITYMAS EI
Sbjct: 234 LVSNSFSYLWTIYITYMASRATPTAIEI 261
>ref|NP_179092.1| 22 kDa peroxisomal membrane protein; protein id: At2g14860.1
[Arabidopsis thaliana] gi|25411581|pir||C84522 22 kDa
peroxisomal membrane protein [imported] - Arabidopsis
thaliana gi|3650028|gb|AAC61283.1| 22 kDa peroxisomal
membrane protein [Arabidopsis thaliana]
Length = 252
Score = 143 bits (360), Expect = 1e-33
Identities = 66/82 (80%), Positives = 72/82 (87%)
Frame = -3
Query: 521 YGPAMTVIFFSFNAHLQGETGTEIVARLKRDLLPTFLSGVMYWPLCDFITFRFIPVHLQP 342
YGP MTVIFFS NA LQGE G+ I+ARLKRDLLP +GVMYWPLCDFITFRF PVHLQP
Sbjct: 165 YGPIMTVIFFSLNASLQGERGSVILARLKRDLLPALFNGVMYWPLCDFITFRFFPVHLQP 224
Query: 341 LVSNSFSYLWTIYITYMASLEK 276
LVSNSFSY+WTIY+TYMA+ EK
Sbjct: 225 LVSNSFSYVWTIYMTYMANREK 246
>ref|NP_568621.1| putative protein; protein id: At5g43140.1, supported by cDNA:
15499. [Arabidopsis thaliana]
Length = 254
Score = 126 bits (316), Expect = 2e-28
Identities = 52/84 (61%), Positives = 71/84 (83%)
Frame = -3
Query: 521 YGPAMTVIFFSFNAHLQGETGTEIVARLKRDLLPTFLSGVMYWPLCDFITFRFIPVHLQP 342
+GP +F+S+NA LQGE EIVARLKRDLLPT +G+MYWP+CDF+TF+++PVHLQP
Sbjct: 170 FGPVSNTVFYSYNAALQGENSEEIVARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQP 229
Query: 341 LVSNSFSYLWTIYITYMASLEKAE 270
L+++S +Y+WTIY+TYMA+ KA+
Sbjct: 230 LMNSSCAYIWTIYLTYMANQTKAD 253
>gb|AAM62733.1| contains similarity to 22 kDa peroxisomal membrane protein
[Arabidopsis thaliana]
Length = 255
Score = 126 bits (316), Expect = 2e-28
Identities = 52/84 (61%), Positives = 71/84 (83%)
Frame = -3
Query: 521 YGPAMTVIFFSFNAHLQGETGTEIVARLKRDLLPTFLSGVMYWPLCDFITFRFIPVHLQP 342
+GP +F+S+NA LQGE EIVARLKRDLLPT +G+MYWP+CDF+TF+++PVHLQP
Sbjct: 171 FGPVSNTVFYSYNAALQGENSEEIVARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQP 230
Query: 341 LVSNSFSYLWTIYITYMASLEKAE 270
L+++S +Y+WTIY+TYMA+ KA+
Sbjct: 231 LMNSSCAYIWTIYLTYMANQTKAD 254
>pir||T05218 hypothetical protein F17I5.90 - Arabidopsis thaliana
gi|3297814|emb|CAA19872.1| putative protein [Arabidopsis
thaliana] gi|7270339|emb|CAB80107.1| putative protein
[Arabidopsis thaliana]
Length = 568
Score = 106 bits (264), Expect = 2e-22
Identities = 49/61 (80%), Positives = 54/61 (88%)
Frame = -3
Query: 521 YGPAMTVIFFSFNAHLQGETGTEIVARLKRDLLPTFLSGVMYWPLCDFITFRFIPVHLQP 342
YGPAM V+FFS NA LQGE G+EIVARLKRDLLPT L+GVMYWPLCDFITF+F PV+LQ
Sbjct: 174 YGPAMNVVFFSLNAALQGENGSEIVARLKRDLLPTMLNGVMYWPLCDFITFKFCPVYLQI 233
Query: 341 L 339
L
Sbjct: 234 L 234
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,196,763
Number of Sequences: 1393205
Number of extensions: 8549288
Number of successful extensions: 18250
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 17761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18240
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
