Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009865A_C01 KMC009865A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabido... 58 7e-08
pir||T49022 hypothetical protein F3C22.90 - Arabidopsis thaliana... 54 8e-07
ref|NP_190837.1| hypothetical protein; protein id: At3g52690.1 [... 54 8e-07
ref|NP_199298.1| putative protein; protein id: At5g44850.1 [Arab... 53 2e-06
ref|NP_198674.1| putative protein; protein id: At5g38580.1 [Arab... 52 4e-06
>ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabidopsis thaliana]
gi|10177843|dbj|BAB11272.1|
emb|CAB62440.1~gene_id:MCD7.20~similar to unknown
protein [Arabidopsis thaliana]
Length = 430
Score = 57.8 bits (138), Expect = 7e-08
Identities = 34/80 (42%), Positives = 45/80 (55%), Gaps = 1/80 (1%)
Frame = -3
Query: 514 WAFPCFVPECLSSQLKTCFIMNYKGAS-ELHFAKYIMENSRALLTMAIGTTSSSKLEDKF 338
W P VP+CL S L+T ++YKG E Y++ENSR L TMAI + S+ +K
Sbjct: 350 WEQPSSVPKCLISSLETVEWIDYKGREVEKKVVMYLLENSRQLKTMAIRSLKSTNDNEKL 409
Query: 337 QQLKELSSYPRTSPICQLLF 278
+ L+ELSS R C L F
Sbjct: 410 KMLQELSSIHRICTKCGLSF 429
>pir||T49022 hypothetical protein F3C22.90 - Arabidopsis thaliana (fragment)
gi|7669943|emb|CAB89230.1| putative protein [Arabidopsis
thaliana]
Length = 427
Score = 54.3 bits (129), Expect = 8e-07
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Frame = -3
Query: 514 WAFPCFVPECLSSQLKTCFIMNYKGASELH--FAKYIMENSRALLTMAIGTT-----SSS 356
W P VPECL SQLK +Y SE+ A YI++N+R L ++ T +
Sbjct: 340 WNEPKNVPECLLSQLKMFVWTSYHWESEVEKEVATYILKNARQLKNVSFSTRPIHSKEHN 399
Query: 355 KLEDKFQQLKELSSYPRTSPICQLLFI 275
KLE+K + LKEL R S C L+FI
Sbjct: 400 KLEEKCKMLKELDGVVRASSSCHLVFI 426
>ref|NP_190837.1| hypothetical protein; protein id: At3g52690.1 [Arabidopsis
thaliana]
Length = 299
Score = 54.3 bits (129), Expect = 8e-07
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Frame = -3
Query: 514 WAFPCFVPECLSSQLKTCFIMNYKGASELH--FAKYIMENSRALLTMAIGTT-----SSS 356
W P VPECL SQLK +Y SE+ A YI++N+R L ++ T +
Sbjct: 212 WNEPKNVPECLLSQLKMFVWTSYHWESEVEKEVATYILKNARQLKNVSFSTRPIHSKEHN 271
Query: 355 KLEDKFQQLKELSSYPRTSPICQLLFI 275
KLE+K + LKEL R S C L+FI
Sbjct: 272 KLEEKCKMLKELDGVVRASSSCHLVFI 298
>ref|NP_199298.1| putative protein; protein id: At5g44850.1 [Arabidopsis thaliana]
gi|2660665|gb|AAC79136.1| hypothetical protein
[Arabidopsis thaliana] gi|10177475|dbj|BAB10866.1|
gb|AAC79136.1~gene_id:K21C13.2~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 331
Score = 53.1 bits (126), Expect = 2e-06
Identities = 34/80 (42%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = -3
Query: 514 WAFPCFVPECLSSQLKTC-FIMNYKG-ASELHFAKYIMENSRALLTMAIGTTSSSKLEDK 341
W P VP CLSS L+ ++ Y G EL F YI+ NS+ L I S+ LE K
Sbjct: 250 WNEPSSVPGCLSSHLEIFEWVEKYGGRVEELGFVTYILANSKCLKRATISLRSAFNLEQK 309
Query: 340 FQQLKELSSYPRTSPICQLL 281
+ +KEL S PR S QLL
Sbjct: 310 QKVMKELDSIPRVSKSSQLL 329
>ref|NP_198674.1| putative protein; protein id: At5g38580.1 [Arabidopsis thaliana]
gi|10176826|dbj|BAB10148.1|
gene_id:MBB18.13~pir||T06729~similar to unknown protein
[Arabidopsis thaliana]
Length = 168
Score = 52.0 bits (123), Expect = 4e-06
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = -3
Query: 514 WAFPCFVPECLSSQLKTCFIMNYKGASE-LHFAKYIMENSRALLTMAIGTTSSSKLEDKF 338
W P FVPECL S L+T Y G + A YI++N+ L T I +
Sbjct: 84 WNQPNFVPECLLSSLQTLLWSRYFGRQQDRDIAVYILKNACHLKTATILADTDEHDVPNL 143
Query: 337 QQLKELSSYPRTSPICQLLFI 275
Q +KEL+ RTS ICQL+F+
Sbjct: 144 QMIKELALSLRTSVICQLVFV 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,038,327
Number of Sequences: 1393205
Number of extensions: 7580392
Number of successful extensions: 15190
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 14696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15160
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
