Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009864A_C01 KMC009864A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171661.1| protein serine/threonine kinase, putative; prot... 91 1e-17
pir||A86146 hypothetical protein F22L4.8 - Arabidopsis thaliana ... 91 1e-17
gb|AAK56254.1|AF367265_1 At1g01540/F22L4_6 [Arabidopsis thaliana... 91 1e-17
emb|CAD41006.1| OSJNBa0042L16.4 [Oryza sativa (japonica cultivar... 85 4e-16
ref|NP_192172.1| putative serine/threonine protein kinase; prote... 83 2e-15
>ref|NP_171661.1| protein serine/threonine kinase, putative; protein id: At1g01540.1,
supported by cDNA: gi_12083265, supported by cDNA:
gi_14194118, supported by cDNA: gi_20334727 [Arabidopsis
thaliana] gi|2505874|emb|CAA73303.1| putative kinase
[Arabidopsis thaliana]
gi|12083266|gb|AAG48792.1|AF332429_1 putative protein
serine/threonine kinase [Arabidopsis thaliana]
Length = 472
Score = 90.5 bits (223), Expect = 1e-17
Identities = 52/91 (57%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Frame = -1
Query: 506 EKPSSKALKRALLVALRCVDPDASKRPKIGHVIHMLEADDLLFRDERRIGGESSHSHRDY 327
E PSSKALKR LLVALRCVDPDA+KRPK+GH+IHMLEA+DLL+RDERR + RD+
Sbjct: 390 EPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHMLEAEDLLYRDERR-------TTRDH 442
Query: 326 -RRERRDSSLDRNRVAEDITDQSEDDSSRHN 237
RER+++++ VA +S + SRH+
Sbjct: 443 GSRERQETAV----VAAG--SESGESGSRHH 467
>pir||A86146 hypothetical protein F22L4.8 - Arabidopsis thaliana
gi|8920590|gb|AAF81312.1|AC061957_8 Contains a strong
similarity to an unknown protein from Arabidopsis
thaliana gi|2505874 and contains an eukaryotic protein
kinase PF|00069 domain. ESTs gb|Z26473, gb|AI996016,
gb|Z17558, gb|N97089, gb|BE039500, gb|AA712856,
gb|Z26772 come from this gene
Length = 497
Score = 90.5 bits (223), Expect = 1e-17
Identities = 52/91 (57%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Frame = -1
Query: 506 EKPSSKALKRALLVALRCVDPDASKRPKIGHVIHMLEADDLLFRDERRIGGESSHSHRDY 327
E PSSKALKR LLVALRCVDPDA+KRPK+GH+IHMLEA+DLL+RDERR + RD+
Sbjct: 415 EPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHMLEAEDLLYRDERR-------TTRDH 467
Query: 326 -RRERRDSSLDRNRVAEDITDQSEDDSSRHN 237
RER+++++ VA +S + SRH+
Sbjct: 468 GSRERQETAV----VAAG--SESGESGSRHH 492
>gb|AAK56254.1|AF367265_1 At1g01540/F22L4_6 [Arabidopsis thaliana] gi|20334728|gb|AAM16225.1|
At1g01540/F22L4_6 [Arabidopsis thaliana]
Length = 479
Score = 90.5 bits (223), Expect = 1e-17
Identities = 47/89 (52%), Positives = 57/89 (63%), Gaps = 20/89 (22%)
Frame = -1
Query: 506 EKPSSKALKRALLVALRCVDPDASKRPKIGHVIHMLEADDLLFRDERRI----------- 360
E PSSKALKR LLVALRCVDPDA+KRPK+GH+IHMLEA+DLL+RDERR
Sbjct: 390 EPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHMLEAEDLLYRDERRTTRDHGSRERQE 449
Query: 359 ---------GGESSHSHRDYRRERRDSSL 300
GES H ++ +++S L
Sbjct: 450 TAVVAAGSESGESGSRHHQQKQRKKESHL 478
>emb|CAD41006.1| OSJNBa0042L16.4 [Oryza sativa (japonica cultivar-group)]
Length = 526
Score = 85.1 bits (209), Expect = 4e-16
Identities = 40/50 (80%), Positives = 45/50 (90%)
Frame = -1
Query: 506 EKPSSKALKRALLVALRCVDPDASKRPKIGHVIHMLEADDLLFRDERRIG 357
EKP+S+ALK+ALLVALRCVDP+A KRPKIGHVIHMLE DD +RDERR G
Sbjct: 431 EKPTSRALKKALLVALRCVDPEARKRPKIGHVIHMLEVDDFPYRDERRGG 480
>ref|NP_192172.1| putative serine/threonine protein kinase; protein id: At4g02630.1
[Arabidopsis thaliana] gi|7488204|pir||T01086 probable
serine/threonine-specific protein kinase (EC 2.7.1.-)
T10P11.10 - Arabidopsis thaliana
gi|2262143|gb|AAC78256.1|AAC78256 putative
serine/threonine protein kinase [Arabidopsis thaliana]
gi|7269023|emb|CAB80756.1| putative serine/threonine
protein kinase [Arabidopsis thaliana]
gi|28393613|gb|AAO42226.1| putative serine/threonine
protein kinase [Arabidopsis thaliana]
gi|28973357|gb|AAO64003.1| putative serine/threonine
protein kinase [Arabidopsis thaliana]
Length = 492
Score = 82.8 bits (203), Expect = 2e-15
Identities = 43/92 (46%), Positives = 60/92 (64%)
Frame = -1
Query: 506 EKPSSKALKRALLVALRCVDPDASKRPKIGHVIHMLEADDLLFRDERRIGGESSHSHRDY 327
+KPS ++LKR LLVALRCVDP+A KRPK+GH+IHMLEA+DL+ +D+RR G
Sbjct: 399 DKPSLRSLKRTLLVALRCVDPNAQKRPKMGHIIHMLEAEDLVSKDDRRNSGGGGGGIEQG 458
Query: 326 RRERRDSSLDRNRVAEDITDQSEDDSSRHNLL 231
R RR +++ ++SED+S L+
Sbjct: 459 RSPRRKTNV----------NESEDESGNSVLI 480
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,454,476
Number of Sequences: 1393205
Number of extensions: 8080613
Number of successful extensions: 23606
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 22641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23561
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
