Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009822A_C01 KMC009822A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172963.2| putative phosphatidylserine synthase; protein i... 135 3e-31
pir||G86284 F9L1.4 protein - Arabidopsis thaliana gi|5103809|gb|... 86 2e-16
sp|Q00576|PSS1_CRILO Phosphatidylserine synthase I (Serine-excha... 61 9e-09
gb|AAH44533.1| Unknown (protein for MGC:55906) [Danio rerio] 61 9e-09
ref|NP_055569.1| phosphatidylserine synthase 1 [Homo sapiens] gi... 59 3e-08
>ref|NP_172963.2| putative phosphatidylserine synthase; protein id: At1g15110.1,
supported by cDNA: gi_19698980 [Arabidopsis thaliana]
gi|19698981|gb|AAL91226.1| similar to phosphatidylserine
synthase-2 [Arabidopsis thaliana]
gi|22136302|gb|AAM91229.1| similar to phosphatidylserine
synthase-2 [Arabidopsis thaliana]
Length = 210
Score = 135 bits (340), Expect = 3e-31
Identities = 59/86 (68%), Positives = 70/86 (80%)
Frame = -2
Query: 520 AIPTIREYHSYLQDRTPVKKVGAYCWLSLAICIVELLICIKFGHGLYPKPMPLWLVIFWS 341
AIPT REY+SYLQDR PVKKVGA+CWLSL ICIVELLICIKFG GLYP MPLW+V W
Sbjct: 125 AIPTTREYNSYLQDRKPVKKVGAFCWLSLGICIVELLICIKFGSGLYPTEMPLWVVTLWG 184
Query: 340 SIGVAIFTFLVLWSWQIHRSLGKKRR 263
S+G+ + FL+ W+W+I + L +KRR
Sbjct: 185 SVGLGLVAFLLSWTWKIQKILAQKRR 210
>pir||G86284 F9L1.4 protein - Arabidopsis thaliana
gi|5103809|gb|AAD39639.1|AC007591_4 Similar to
gb|AF099053 phosphatidylserine synthase-2 from Mus
musculus. EST gb|N96271 comes from this gene.
[Arabidopsis thaliana]
Length = 454
Score = 86.3 bits (212), Expect = 2e-16
Identities = 40/50 (80%), Positives = 43/50 (86%)
Frame = -2
Query: 520 AIPTIREYHSYLQDRTPVKKVGAYCWLSLAICIVELLICIKFGHGLYPKP 371
AIPT REY+SYLQDR PVKKVGA+CWLSL ICIVELLICIKFG G + P
Sbjct: 340 AIPTTREYNSYLQDRKPVKKVGAFCWLSLGICIVELLICIKFGSGRWIVP 389
>sp|Q00576|PSS1_CRILO Phosphatidylserine synthase I (Serine-exchange enzyme I)
gi|109417|pir||A41680 integral membrane protein pssA -
Chinese hamster gi|220281|dbj|BAA01084.1|
phosphatidylserine synthase [Cricetulus sp.]
Length = 471
Score = 60.8 bits (146), Expect = 9e-09
Identities = 32/71 (45%), Positives = 46/71 (64%)
Frame = -2
Query: 514 PTIREYHSYLQDRTPVKKVGAYCWLSLAICIVELLICIKFGHGLYPKPMPLWLVIFWSSI 335
PT+R+Y++YL D T K+VG CW+ I +E ++CIKFG L+ K L+ V+FW +
Sbjct: 333 PTVRQYYAYLTD-TQCKRVGTQCWVFGVIGFLEAIVCIKFGQDLFSKTQILY-VVFW-LL 389
Query: 334 GVAIFTFLVLW 302
VA TFL L+
Sbjct: 390 CVAFTTFLCLY 400
>gb|AAH44533.1| Unknown (protein for MGC:55906) [Danio rerio]
Length = 465
Score = 60.8 bits (146), Expect = 9e-09
Identities = 33/71 (46%), Positives = 45/71 (62%)
Frame = -2
Query: 514 PTIREYHSYLQDRTPVKKVGAYCWLSLAICIVELLICIKFGHGLYPKPMPLWLVIFWSSI 335
PT+R+Y++YL D T K+VG CW+ AI +E L CIKFG L+ K L+ VI W +
Sbjct: 333 PTVRQYYAYLTD-TQCKRVGTQCWVFGAIAFLEALACIKFGQDLFSKTQILY-VILW-LV 389
Query: 334 GVAIFTFLVLW 302
+A TFL L+
Sbjct: 390 CLAFITFLCLY 400
>ref|NP_055569.1| phosphatidylserine synthase 1 [Homo sapiens]
gi|1346881|sp|P48651|PSS1_HUMAN Phosphatidylserine
synthase I (Serine-exchange enzyme I)
gi|603802|dbj|BAA03520.1| KIAA0024 [Homo sapiens]
gi|13278861|gb|AAH04192.1|AAH04192 phosphatidylserine
synthase 1 [Homo sapiens]
gi|13325150|gb|AAH04390.1|AAH04390 phosphatidylserine
synthase 1 [Homo sapiens]
Length = 473
Score = 58.9 bits (141), Expect = 3e-08
Identities = 30/71 (42%), Positives = 46/71 (64%)
Frame = -2
Query: 514 PTIREYHSYLQDRTPVKKVGAYCWLSLAICIVELLICIKFGHGLYPKPMPLWLVIFWSSI 335
PT+R+Y++YL D T K+VG CW+ I +E ++CIKFG L+ K L++V++ +
Sbjct: 333 PTVRQYYAYLTD-TQCKRVGTQCWVFGVIGFLEAIVCIKFGQDLFSKTQILYVVLW--LL 389
Query: 334 GVAIFTFLVLW 302
VA TFL L+
Sbjct: 390 CVAFTTFLCLY 400
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,642,619
Number of Sequences: 1393205
Number of extensions: 9774699
Number of successful extensions: 24070
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 23556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24054
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
