Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009809A_C01 KMC009809A_c01
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB55500.1| putative mitochondrial processing peptidase alph... 259 2e-68
sp|P29677|MPPA_SOLTU Mitochondrial processing peptidase alpha su... 252 3e-66
pir||S51590 mitochondrial processing peptidase (EC 3.4.24.64) al... 252 3e-66
gb|AAK59675.1| putative mitochondrial processing peptidase alpha... 246 2e-64
ref|NP_566548.1| putative mitochondrial processing peptidase al... 246 2e-64
>dbj|BAB55500.1| putative mitochondrial processing peptidase alpha subuunit,
mitochondrial recursor(ALPHA-MPP) [Oryza sativa
(japonica cultivar-group)]
Length = 884
Score = 259 bits (662), Expect = 2e-68
Identities = 127/172 (73%), Positives = 145/172 (83%)
Frame = +2
Query: 122 KGHGGNLGATRFVTSAAAATRASSGGLFSWLTGERSSSLPPLDTPLSGVVLPDPLPDFVE 301
+GH +RF +++ + SSGGLFSWL GE+SS LPPLD PL G+ LP PLPDFVE
Sbjct: 61 QGHHERYSYSRFASTSVV--KQSSGGLFSWLLGEKSSQLPPLDVPLPGITLPPPLPDFVE 118
Query: 302 ASKTSITTLPNGLKIASETSPNPAASIGLYIDCGSIYETPLSSGASHLLERMAFKSTANR 481
SKT +TTLPNG+KIASETS +PAAS+GLYIDCGSIYETP SSGASHLLERMAFKST NR
Sbjct: 119 PSKTKVTTLPNGIKIASETSVSPAASVGLYIDCGSIYETPASSGASHLLERMAFKSTTNR 178
Query: 482 SHFRIVREVEAIGGNIGASASREQMGYTFDALKSYVPEMVELLIDSIRNPAF 637
SH R+VREVEAIGGN+ ASASREQM YT+DA K+YVPEMVE+LIDS+RNPAF
Sbjct: 179 SHLRLVREVEAIGGNVSASASREQMCYTYDAFKAYVPEMVEVLIDSVRNPAF 230
>sp|P29677|MPPA_SOLTU Mitochondrial processing peptidase alpha subunit, mitochondrial
precursor (Alpha-MPP) (Ubiquinol-cytochrome C reductase
subunit II) gi|421956|pir||S23558 ubiquinol-cytochrome-c
reductase (EC 1.10.2.2) alpha chain precursor - potato
gi|21493|emb|CAA46990.1| mitochondrial processing
peptidase [Solanum tuberosum]
Length = 504
Score = 252 bits (644), Expect = 3e-66
Identities = 131/186 (70%), Positives = 150/186 (80%)
Frame = +2
Query: 83 MYRAAASSLKRGLKGHGGNLGATRFVTSAAAATRASSGGLFSWLTGERSSSLPPLDTPLS 262
MYR A+S L LK GN TRF +SAA AT+ S GGLFSW+TG+ SSS+ PLD PL+
Sbjct: 1 MYRCASSRLS-SLKARQGNRVLTRFSSSAAVATKPS-GGLFSWITGDTSSSVTPLDFPLN 58
Query: 263 GVVLPDPLPDFVEASKTSITTLPNGLKIASETSPNPAASIGLYIDCGSIYETPLSSGASH 442
V L PLPD+VE +KT ITTL NGLK+ASE S NPAASIGLY+DCGSIYETP S GA+H
Sbjct: 59 DVKLSPPLPDYVEPAKTQITTLANGLKVASEASVNPAASIGLYVDCGSIYETPASYGATH 118
Query: 443 LLERMAFKSTANRSHFRIVREVEAIGGNIGASASREQMGYTFDALKSYVPEMVELLIDSI 622
LLERMAFKST NRSH RIVRE+EAIGGN+ ASASRE M YT+DALK+YVP+MVE+L D +
Sbjct: 119 LLERMAFKSTLNRSHLRIVREIEAIGGNVTASASREHMIYTYDALKTYVPQMVEMLADCV 178
Query: 623 RNPAFL 640
RNPAFL
Sbjct: 179 RNPAFL 184
>pir||S51590 mitochondrial processing peptidase (EC 3.4.24.64) alpha-II chain
precursor - potato gi|587562|emb|CAA56520.1|
mitochondrial processing peptidase [Solanum tuberosum]
Length = 504
Score = 252 bits (644), Expect = 3e-66
Identities = 132/186 (70%), Positives = 148/186 (78%)
Frame = +2
Query: 83 MYRAAASSLKRGLKGHGGNLGATRFVTSAAAATRASSGGLFSWLTGERSSSLPPLDTPLS 262
MYRA +S L R LK G N RF+ S A AT+ S GGLFSWLTG S SLPPLD PL
Sbjct: 1 MYRATSSRL-RALKVRGTNRVLARFLCSTAVATKPS-GGLFSWLTGGGSDSLPPLDFPLK 58
Query: 263 GVVLPDPLPDFVEASKTSITTLPNGLKIASETSPNPAASIGLYIDCGSIYETPLSSGASH 442
+ LP PLPD+VE KT ITTL NGLKIASE S +PAASIGLY+DCGSIYE P S GA+H
Sbjct: 59 DIQLPPPLPDYVEPGKTKITTLTNGLKIASEISASPAASIGLYVDCGSIYEAPASYGATH 118
Query: 443 LLERMAFKSTANRSHFRIVREVEAIGGNIGASASREQMGYTFDALKSYVPEMVELLIDSI 622
LLERMAFKST NRSH RIVREVEAIGGN+ A+ASRE + YT+DALK+YVP+MVELL+DS+
Sbjct: 119 LLERMAFKSTLNRSHLRIVREVEAIGGNVTAAASREHLIYTYDALKTYVPQMVELLVDSV 178
Query: 623 RNPAFL 640
RNPAFL
Sbjct: 179 RNPAFL 184
>gb|AAK59675.1| putative mitochondrial processing peptidase alpha subunit
[Arabidopsis thaliana]
Length = 499
Score = 246 bits (628), Expect = 2e-64
Identities = 130/188 (69%), Positives = 149/188 (79%), Gaps = 2/188 (1%)
Frame = +2
Query: 83 MYRAAASSLK--RGLKGHGGNLGATRFVTSAAAATRASSGGLFSWLTGERSSSLPPLDTP 256
MYR AAS K +G+ H N A+R+ +S+A AT +SS SWL+G SSSLP ++ P
Sbjct: 1 MYRTAASRAKALKGILNH--NFRASRYASSSAVATSSSSS---SWLSGGYSSSLPSMNIP 55
Query: 257 LSGVVLPDPLPDFVEASKTSITTLPNGLKIASETSPNPAASIGLYIDCGSIYETPLSSGA 436
L+GV LP PL D VE SK TTLPNGL IA+E SPNPAASIGLY+DCGSIYETP GA
Sbjct: 56 LAGVSLPPPLSDHVEPSKLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGA 115
Query: 437 SHLLERMAFKSTANRSHFRIVREVEAIGGNIGASASREQMGYTFDALKSYVPEMVELLID 616
+HLLERMAFKST NRSHFR+VRE+EAIGGN ASASREQMGYT DALK+YVPEMVE+LID
Sbjct: 116 THLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLID 175
Query: 617 SIRNPAFL 640
S+RNPAFL
Sbjct: 176 SVRNPAFL 183
>ref|NP_566548.1| putative mitochondrial processing peptidase alpha subunit; protein
id: At3g16480.1, supported by cDNA: gi_14334533
[Arabidopsis thaliana] gi|2062155|gb|AAB63629.1|
mitochondrial processing peptidase alpha subunit
precusor isolog [Arabidopsis thaliana]
gi|9279647|dbj|BAB01147.1| mitochondrial processing
peptidase alpha subunit [Arabidopsis thaliana]
gi|23297133|gb|AAN13101.1| putative mitochondrial
processing peptidase alpha subunit [Arabidopsis
thaliana]
Length = 499
Score = 246 bits (628), Expect = 2e-64
Identities = 130/188 (69%), Positives = 149/188 (79%), Gaps = 2/188 (1%)
Frame = +2
Query: 83 MYRAAASSLK--RGLKGHGGNLGATRFVTSAAAATRASSGGLFSWLTGERSSSLPPLDTP 256
MYR AAS K +G+ H N A+R+ +S+A AT +SS SWL+G SSSLP ++ P
Sbjct: 1 MYRTAASRAKALKGILNH--NFRASRYASSSAVATSSSSS---SWLSGGYSSSLPSMNIP 55
Query: 257 LSGVVLPDPLPDFVEASKTSITTLPNGLKIASETSPNPAASIGLYIDCGSIYETPLSSGA 436
L+GV LP PL D VE SK TTLPNGL IA+E SPNPAASIGLY+DCGSIYETP GA
Sbjct: 56 LAGVSLPPPLSDHVEPSKLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGA 115
Query: 437 SHLLERMAFKSTANRSHFRIVREVEAIGGNIGASASREQMGYTFDALKSYVPEMVELLID 616
+HLLERMAFKST NRSHFR+VRE+EAIGGN ASASREQMGYT DALK+YVPEMVE+LID
Sbjct: 116 THLLERMAFKSTLNRSHFRLVREIEAIGGNTSASASREQMGYTIDALKTYVPEMVEVLID 175
Query: 617 SIRNPAFL 640
S+RNPAFL
Sbjct: 176 SVRNPAFL 183
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,570,696
Number of Sequences: 1393205
Number of extensions: 14116411
Number of successful extensions: 53373
Number of sequences better than 10.0: 285
Number of HSP's better than 10.0 without gapping: 50337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53216
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
