Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009761A_C01 KMC009761A_c01
(755 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181562.1| hypothetical protein; protein id: At2g40316.1 [... 57 3e-07
prf||1615305C nodC gene 34 2.6
sp|Q07755|NODC_AZOCA N-ACETYLGLUCOSAMINYLTRANSFERASE (NODULATION... 34 2.6
ref|NP_702823.1| hypothetical protein [Plasmodium falciparum 3D7... 33 4.4
gb|EAA16603.1| hypothetical protein [Plasmodium yoelii yoelii] 33 5.8
>ref|NP_181562.1| hypothetical protein; protein id: At2g40316.1 [Arabidopsis
thaliana] gi|4588007|gb|AAD25948.1|AF085279_21
hypothetical protein [Arabidopsis thaliana]
gi|20198016|gb|AAM15352.1| hypothetical protein
[Arabidopsis thaliana]
Length = 142
Score = 57.0 bits (136), Expect = 3e-07
Identities = 26/42 (61%), Positives = 32/42 (75%), Gaps = 1/42 (2%)
Frame = -1
Query: 755 LFAAYLLAGIAYRFF-LGIRGIDVIPNMDFWMSLPRRTQGLY 633
LF AYL+ G YR+F LGIRGIDVIPNMD+W ++P Q L+
Sbjct: 87 LFGAYLVGGAVYRYFSLGIRGIDVIPNMDYWATVPHSIQVLF 128
>prf||1615305C nodC gene
Length = 395
Score = 33.9 bits (76), Expect = 2.6
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +2
Query: 482 FSAVCSSQASDDPYEFTR*IQNQKHNIKSSQENRSSGDLQMVP*TSSPKMNTDPVFSLAS 661
F AVC ASD+ + F QN+ + R+ GDL ++ S ++ D V LAS
Sbjct: 95 FHAVCDKYASDERFIFVELDQNKGTAAQMEAIRRTDGDL-ILNVDSDTVIDKDVVTKLAS 153
Query: 662 SSRSP 676
S R+P
Sbjct: 154 SMRAP 158
>sp|Q07755|NODC_AZOCA N-ACETYLGLUCOSAMINYLTRANSFERASE (NODULATION PROTEIN C)
gi|77474|pir||JQ0396 nodulation protein nodC -
Azorhizobium caulinodans gi|310294|gb|AAB51164.1|
N-acetylglucosaminyltransferase
Length = 395
Score = 33.9 bits (76), Expect = 2.6
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +2
Query: 482 FSAVCSSQASDDPYEFTR*IQNQKHNIKSSQENRSSGDLQMVP*TSSPKMNTDPVFSLAS 661
F AVC ASD+ + F QN+ + R+ GDL ++ S ++ D V LAS
Sbjct: 95 FHAVCDKYASDERFIFVELDQNKGTAAQMEAIRRTDGDL-ILNVDSDTVIDKDVVTKLAS 153
Query: 662 SSRSP 676
S R+P
Sbjct: 154 SMRAP 158
>ref|NP_702823.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498239|emb|CAD49210.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2031
Score = 33.1 bits (74), Expect = 4.4
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3
Query: 369 IFHSFLRFFYKLTLFYVSLKKEEGKEKVKQN 277
I+ F+ FY L L+Y ++KKE+ K+K K+N
Sbjct: 1507 IYDFFVNVFYYLDLYYSNMKKEKQKKKKKKN 1537
>gb|EAA16603.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 164
Score = 32.7 bits (73), Expect = 5.8
Identities = 21/64 (32%), Positives = 31/64 (47%)
Frame = +1
Query: 118 LKRKKKELMIKLTKELHKKSV*LPDYQLTNVNQNYGIGSIIVLFFPQELH*TFILFYLFF 297
LK+++K+ M KE ++K +L N N S +L F F LF+L+F
Sbjct: 114 LKKREKQRMENFLKESYRK-------RLQKFNDNLASNSTTILHF------LFFLFFLYF 160
Query: 298 SLFF 309
LFF
Sbjct: 161 FLFF 164
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 606,112,879
Number of Sequences: 1393205
Number of extensions: 12656112
Number of successful extensions: 35891
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35818
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
