Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009720A_C01 KMC009720A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA75572.1| putative start codon [Medicago truncatula] 119 2e-26
ref|NP_198846.1| putative protein; protein id: At5g40300.1 [Arab... 114 6e-25
gb|AAO22748.1| unknown protein [Arabidopsis thaliana] 112 3e-24
ref|NP_201088.1| putative protein; protein id: At5g62820.1 [Arab... 97 9e-20
ref|NP_181174.1| hypothetical protein; protein id: At2g36330.1 [... 80 2e-14
>emb|CAA75572.1| putative start codon [Medicago truncatula]
Length = 234
Score = 119 bits (298), Expect = 2e-26
Identities = 63/102 (61%), Positives = 77/102 (74%), Gaps = 3/102 (2%)
Frame = -2
Query: 531 IGFVYSGLQICDLGLYLSTGKHVVEHRLRVYFSFALDQILTYLLMSASSSAAPRAYDWQS 352
IGFVYSGLQIC L +YL T KH + +L+ YF+ A+DQ L Y+LMSASSSAA A+ +
Sbjct: 132 IGFVYSGLQICHLVMYLITKKHTINPKLQGYFNVAIDQTLAYILMSASSSAATAAHLLKD 191
Query: 351 HW---GEDQFPYMANASVALSFVAFAAFALASLVSGSIICRF 235
+W G D F MANASV++SF+AF AFALASLVSG I+CRF
Sbjct: 192 YWLEHGADTFIEMANASVSMSFLAFGAFALASLVSGIILCRF 233
>ref|NP_198846.1| putative protein; protein id: At5g40300.1 [Arabidopsis thaliana]
gi|10178139|dbj|BAB11584.1| gene_id:MPO12.1~unknown
protein [Arabidopsis thaliana]
Length = 270
Score = 114 bits (286), Expect = 6e-25
Identities = 58/100 (58%), Positives = 68/100 (68%)
Frame = -2
Query: 531 IGFVYSGLQICDLGLYLSTGKHVVEHRLRVYFSFALDQILTYLLMSASSSAAPRAYDWQS 352
IGFVYSG ICDL LST H LR + F LDQ+L YLL SAS+SA+ R DWQS
Sbjct: 169 IGFVYSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASASTSASIRVDDWQS 228
Query: 351 HWGEDQFPYMANASVALSFVAFAAFALASLVSGSIICRFR 232
+WG D+FP +A ASVALS+V+F AFA SL SG +C R
Sbjct: 229 NWGADKFPDLARASVALSYVSFVAFAFCSLASGYALCALR 268
>gb|AAO22748.1| unknown protein [Arabidopsis thaliana]
Length = 283
Score = 112 bits (280), Expect = 3e-24
Identities = 51/93 (54%), Positives = 68/93 (72%)
Frame = -2
Query: 531 IGFVYSGLQICDLGLYLSTGKHVVEHRLRVYFSFALDQILTYLLMSASSSAAPRAYDWQS 352
+ FVYS Q CDL +L KH++ H LR F F +DQ+L YLLMSAS++A R DW S
Sbjct: 182 VAFVYSSFQACDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVS 241
Query: 351 HWGEDQFPYMANASVALSFVAFAAFALASLVSG 253
+WG+D+F MA+AS+A+SF+AF AFA +SL+SG
Sbjct: 242 NWGKDEFTEMASASIAMSFLAFLAFAFSSLISG 274
>ref|NP_201088.1| putative protein; protein id: At5g62820.1 [Arabidopsis thaliana]
Length = 297
Score = 97.4 bits (241), Expect = 9e-20
Identities = 45/92 (48%), Positives = 64/92 (68%)
Frame = -2
Query: 531 IGFVYSGLQICDLGLYLSTGKHVVEHRLRVYFSFALDQILTYLLMSASSSAAPRAYDWQS 352
I FVYS + CD Y++ +++ F F++DQ+L YLLMSASS AA R DW S
Sbjct: 196 IAFVYSAFEACDAACYIAKESYMINCGFHDLFVFSMDQLLAYLLMSASSCAATRVDDWVS 255
Query: 351 HWGEDQFPYMANASVALSFVAFAAFALASLVS 256
+WG+D+F MA AS+A+SF+AF AFA+++L+S
Sbjct: 256 NWGKDEFTQMATASIAVSFLAFGAFAVSALIS 287
>ref|NP_181174.1| hypothetical protein; protein id: At2g36330.1 [Arabidopsis
thaliana] gi|25408462|pir||D84779 hypothetical protein
At2g36330 [imported] - Arabidopsis thaliana
gi|4510344|gb|AAD21433.1| hypothetical protein
[Arabidopsis thaliana]
Length = 431
Score = 80.1 bits (196), Expect = 2e-14
Identities = 39/85 (45%), Positives = 54/85 (62%)
Frame = -2
Query: 507 QICDLGLYLSTGKHVVEHRLRVYFSFALDQILTYLLMSASSSAAPRAYDWQSHWGEDQFP 328
Q CDL +L KH++ H LR F F +DQ ++A R DW S+WG+D+F
Sbjct: 348 QACDLAYHLVKEKHLISHHLRPLFEFIIDQ----------ATAVTRVDDWVSNWGKDEFT 397
Query: 327 YMANASVALSFVAFAAFALASLVSG 253
MA+AS+A+SF+AF AFA +SL+SG
Sbjct: 398 EMASASIAMSFLAFLAFAFSSLISG 422
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,978,222
Number of Sequences: 1393205
Number of extensions: 10019373
Number of successful extensions: 24137
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 23391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24093
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
