Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009716A_C01 KMC009716A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568690.1| DnaJ protein-like; protein id: At5g48030.1, sup... 149 4e-35
gb|AAM49801.1| GFA2 [Arabidopsis thaliana] 149 4e-35
gb|AAM62460.1| DnaJ protein-like [Arabidopsis thaliana] 149 4e-35
dbj|BAB11067.1| DnaJ protein-like [Arabidopsis thaliana] 140 1e-32
dbj|BAC22216.1| DnaJ protein-like~contains EST AU181927(C61864) ... 120 1e-26
>ref|NP_568690.1| DnaJ protein-like; protein id: At5g48030.1, supported by cDNA:
14006. [Arabidopsis thaliana]
gi|26452200|dbj|BAC43188.1| putative DnaJ protein
[Arabidopsis thaliana]
Length = 456
Score = 149 bits (375), Expect = 4e-35
Identities = 74/101 (73%), Positives = 87/101 (85%)
Frame = -2
Query: 628 DIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTKNSYTFGNQ 449
DIHVDAVLS+TQAILGGTIQVPTLTGDVV+KVRPGTQPG KVVL+NKGI+ + S FG+Q
Sbjct: 356 DIHVDAVLSVTQAILGGTIQVPTLTGDVVVKVRPGTQPGHKVVLRNKGIRARKSTKFGDQ 415
Query: 448 YVHFNVSIPTNLTERQRELIEEFVKEEREASDKQREASASA 326
YVHFNVSIP N+T+RQREL+EEF K E + +QR A+ S+
Sbjct: 416 YVHFNVSIPANITQRQRELLEEFSKAE-QGEYEQRTATGSS 455
>gb|AAM49801.1| GFA2 [Arabidopsis thaliana]
Length = 456
Score = 149 bits (375), Expect = 4e-35
Identities = 74/101 (73%), Positives = 87/101 (85%)
Frame = -2
Query: 628 DIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTKNSYTFGNQ 449
DIHVDAVLS+TQAILGGTIQVPTLTGDVV+KVRPGTQPG KVVL+NKGI+ + S FG+Q
Sbjct: 356 DIHVDAVLSVTQAILGGTIQVPTLTGDVVVKVRPGTQPGHKVVLRNKGIRARKSTKFGDQ 415
Query: 448 YVHFNVSIPTNLTERQRELIEEFVKEEREASDKQREASASA 326
YVHFNVSIP N+T+RQREL+EEF K E + +QR A+ S+
Sbjct: 416 YVHFNVSIPANITQRQRELLEEFSKAE-QGEYEQRTATGSS 455
>gb|AAM62460.1| DnaJ protein-like [Arabidopsis thaliana]
Length = 456
Score = 149 bits (375), Expect = 4e-35
Identities = 74/101 (73%), Positives = 87/101 (85%)
Frame = -2
Query: 628 DIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTKNSYTFGNQ 449
DIHVDAVLS+TQAILGGTIQVPTLTGDVV+KVRPGTQPG KVVL+NKGI+ + S FG+Q
Sbjct: 356 DIHVDAVLSVTQAILGGTIQVPTLTGDVVVKVRPGTQPGHKVVLRNKGIRARKSTKFGDQ 415
Query: 448 YVHFNVSIPTNLTERQRELIEEFVKEEREASDKQREASASA 326
YVHFNVSIP N+T+RQREL+EEF K E + +QR A+ S+
Sbjct: 416 YVHFNVSIPANITQRQRELLEEFSKAE-QGEYEQRTATGSS 455
>dbj|BAB11067.1| DnaJ protein-like [Arabidopsis thaliana]
Length = 461
Score = 140 bits (354), Expect = 1e-32
Identities = 74/111 (66%), Positives = 87/111 (77%), Gaps = 10/111 (9%)
Frame = -2
Query: 628 DIHVDAVLSITQ----------AILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIK 479
DIHVDAVLS+TQ AILGGTIQVPTLTGDVV+KVRPGTQPG KVVL+NKGI+
Sbjct: 351 DIHVDAVLSVTQHLFWTSGAVSAILGGTIQVPTLTGDVVVKVRPGTQPGHKVVLRNKGIR 410
Query: 478 TKNSYTFGNQYVHFNVSIPTNLTERQRELIEEFVKEEREASDKQREASASA 326
+ S FG+QYVHFNVSIP N+T+RQREL+EEF K E + +QR A+ S+
Sbjct: 411 ARKSTKFGDQYVHFNVSIPANITQRQRELLEEFSKAE-QGEYEQRTATGSS 460
>dbj|BAC22216.1| DnaJ protein-like~contains EST AU181927(C61864) [Oryza sativa
(japonica cultivar-group)]
Length = 415
Score = 120 bits (302), Expect = 1e-26
Identities = 56/69 (81%), Positives = 66/69 (95%)
Frame = -2
Query: 628 DIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKNKGIKTKNSYTFGNQ 449
DIHVDAVL++TQAILGGT+QVPTL+GDVVLKV+PGTQPGQKVVL+ KGIKT+NS +G+Q
Sbjct: 326 DIHVDAVLNVTQAILGGTVQVPTLSGDVVLKVKPGTQPGQKVVLRGKGIKTRNSSYYGDQ 385
Query: 448 YVHFNVSIP 422
YVHFNV+IP
Sbjct: 386 YVHFNVNIP 394
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,038,389
Number of Sequences: 1393205
Number of extensions: 10907754
Number of successful extensions: 26062
Number of sequences better than 10.0: 329
Number of HSP's better than 10.0 without gapping: 24991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26005
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
