Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009708A_C01 KMC009708A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN72013.1| putative protein [Arabidopsis thaliana] 52 4e-06
ref|NP_568776.1| myb family transcription factor; protein id: At... 52 4e-06
pir||G86145 F22L4.6 protein - Arabidopsis thaliana gi|8920588|gb... 46 3e-04
ref|NP_171659.1| myb family transcription factor; protein id: At... 46 3e-04
ref|NP_192037.1| myb family transcription factor; protein id: At... 44 0.002
>gb|AAN72013.1| putative protein [Arabidopsis thaliana]
Length = 331
Score = 52.4 bits (124), Expect = 4e-06
Identities = 24/28 (85%), Positives = 28/28 (99%)
Frame = -2
Query: 590 VLLLMRNLSIHLTSPDFEDHRKLLSSYE 507
VLLLMRNLSI+L+SPDFEDHR+LLSSY+
Sbjct: 279 VLLLMRNLSINLSSPDFEDHRRLLSSYD 306
>ref|NP_568776.1| myb family transcription factor; protein id: At5g52660.1, supported
by cDNA: 37702. [Arabidopsis thaliana]
gi|21593278|gb|AAM65227.1| contains similarity to
MYB-related DNA-binding protein [Arabidopsis thaliana]
Length = 330
Score = 52.4 bits (124), Expect = 4e-06
Identities = 24/28 (85%), Positives = 28/28 (99%)
Frame = -2
Query: 590 VLLLMRNLSIHLTSPDFEDHRKLLSSYE 507
VLLLMRNLSI+L+SPDFEDHR+LLSSY+
Sbjct: 278 VLLLMRNLSINLSSPDFEDHRRLLSSYD 305
>pir||G86145 F22L4.6 protein - Arabidopsis thaliana
gi|8920588|gb|AAF81310.1|AC061957_6 Contains similarity
to a dehydrogenase from Arabidopsis thaliana gb|Y12776
and contains a D-isomer specific 2-hydroxyacid
dehydrogenases PF|00389 and Myb-like DNA binding PF|00249
domains. ESTs gb|Z48385, gb|Z48386 come from this gene
Length = 1284
Score = 46.2 bits (108), Expect = 3e-04
Identities = 20/29 (68%), Positives = 27/29 (92%)
Frame = -2
Query: 590 VLLLMRNLSIHLTSPDFEDHRKLLSSYEA 504
VLLLM+NLS++LTSP+F++ RKL+SSY A
Sbjct: 1255 VLLLMKNLSVNLTSPEFDEQRKLISSYNA 1283
>ref|NP_171659.1| myb family transcription factor; protein id: At1g01520.1
[Arabidopsis thaliana]
Length = 287
Score = 46.2 bits (108), Expect = 3e-04
Identities = 20/29 (68%), Positives = 27/29 (92%)
Frame = -2
Query: 590 VLLLMRNLSIHLTSPDFEDHRKLLSSYEA 504
VLLLM+NLS++LTSP+F++ RKL+SSY A
Sbjct: 258 VLLLMKNLSVNLTSPEFDEQRKLISSYNA 286
>ref|NP_192037.1| myb family transcription factor; protein id: At4g01280.1
[Arabidopsis thaliana] gi|25371561|pir||G85016 probable
myb-related DNA-binding protein [imported] - Arabidopsis
thaliana gi|7267625|emb|CAB80937.1| putative myb-related
DNA-binding protein [Arabidopsis thaliana]
Length = 285
Score = 43.9 bits (102), Expect = 0.002
Identities = 19/30 (63%), Positives = 27/30 (89%)
Frame = -2
Query: 590 VLLLMRNLSIHLTSPDFEDHRKLLSSYEAE 501
VLLLM+NLS++LTSP+F + R+L+SSY A+
Sbjct: 253 VLLLMQNLSVNLTSPEFAEQRRLISSYSAK 282
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,107,397
Number of Sequences: 1393205
Number of extensions: 9756226
Number of successful extensions: 20889
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20885
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
