Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009686A_C01 KMC009686A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563675.1| expressed protein; protein id: At1g03110.1, sup... 140 8e-33
pir||B86162 F10O3.6 protein - Arabidopsis thaliana gi|4587566|gb... 124 8e-28
gb|AAK71552.1|AC087852_12 putative WD repeat protein [Oryza sati... 86 3e-16
ref|XP_192975.2| similar to Pax transcription activation domain ... 35 0.47
ref|NP_061366.1| Pax transcription activation domain interacting... 35 0.47
>ref|NP_563675.1| expressed protein; protein id: At1g03110.1, supported by cDNA:
gi_13877930, supported by cDNA: gi_16323463 [Arabidopsis
thaliana] gi|13877931|gb|AAK44043.1|AF370228_1 unknown
protein [Arabidopsis thaliana]
gi|16323464|gb|AAL15226.1| unknown protein [Arabidopsis
thaliana]
Length = 427
Score = 140 bits (354), Expect = 8e-33
Identities = 68/138 (49%), Positives = 99/138 (71%)
Frame = -1
Query: 554 GIVLMSCNSSSQKLSVIKVVSFAGDGFVPTCLGNIPSTGKLWMVTGVSSLPGSNYPSVAR 375
GI L+SC+ ++ LS+ KV+ G+ F+PT + S+ LWMV+G S+LPGSN+P +R
Sbjct: 288 GIFLLSCDLTAHTLSITKVIKIPGESFIPTSIAVSASSRLLWMVSGASNLPGSNHPGFSR 347
Query: 374 VRVISGIDGDQEPVVLGDDNIPGGEKLLQTLQGTASVDDNAFLAAAEAVKTAMCNLLVKK 195
VRVIS ++ + + L D+ IPGG KLL+ LQG +++++ AAAEAV+ AM +LL+KK
Sbjct: 348 VRVISCLETESSSI-LEDEQIPGGTKLLEQLQGKVTIEESVMSAAAEAVRAAMSSLLMKK 406
Query: 194 QYPAENREYRKKTRNDRK 141
QY E RE+RK+TRND+K
Sbjct: 407 QYSEEKREFRKRTRNDKK 424
>pir||B86162 F10O3.6 protein - Arabidopsis thaliana
gi|4587566|gb|AAD25797.1|AC006550_5 Contains 2 PF|00400
WD40, G-beta repeats. [Arabidopsis thaliana]
Length = 309
Score = 124 bits (311), Expect = 8e-28
Identities = 60/120 (50%), Positives = 86/120 (71%)
Frame = -1
Query: 500 VVSFAGDGFVPTCLGNIPSTGKLWMVTGVSSLPGSNYPSVARVRVISGIDGDQEPVVLGD 321
V+ G+ F+PT + S+ LWMV+G S+LPGSN+P +RVRVIS ++ + + L D
Sbjct: 188 VIKIPGESFIPTSIAVSASSRLLWMVSGASNLPGSNHPGFSRVRVISCLETESSSI-LED 246
Query: 320 DNIPGGEKLLQTLQGTASVDDNAFLAAAEAVKTAMCNLLVKKQYPAENREYRKKTRNDRK 141
+ IPGG KLL+ LQG +++++ AAAEAV+ AM +LL+KKQY E RE+RK+TRND+K
Sbjct: 247 EQIPGGTKLLEQLQGKVTIEESVMSAAAEAVRAAMSSLLMKKQYSEEKREFRKRTRNDKK 306
>gb|AAK71552.1|AC087852_12 putative WD repeat protein [Oryza sativa (japonica cultivar-group)]
Length = 435
Score = 85.9 bits (211), Expect = 3e-16
Identities = 53/149 (35%), Positives = 81/149 (53%), Gaps = 9/149 (6%)
Frame = -1
Query: 554 GIVLMSCNSSSQKLSVIKVVSFAGDGFVPTCLGNIPSTGKLWMVTGVSSLPGSNYPSVA- 378
G++L++C+ ++KLS +KVV+ ++PT L + S LW V G S++P +
Sbjct: 287 GVMLLACDLIAKKLSFLKVVT-TEKCYIPTSLSSSFSADLLWTVMGASNMPNQATSQLCT 345
Query: 377 RVRVISGIDGD------QEPVVLGDDNIPGGEKLLQTLQGTASV--DDNAFLAAAEAVKT 222
R+++I D P VL D +P GEKLL LQG+ + + + A+K
Sbjct: 346 RLKIIPHFKKDPLAGCDHVPTVLEDSEVPHGEKLLLALQGSLDIAKQEEVLASVLAALKV 405
Query: 221 AMCNLLVKKQYPAENREYRKKTRNDRKHK 135
+M +LVKK Y E RE RK+ RND+K K
Sbjct: 406 SMHKMLVKKHYSEERREQRKRGRNDKKIK 434
>ref|XP_192975.2| similar to Pax transcription activation domain interacting protein
[Mus musculus]
Length = 645
Score = 35.4 bits (80), Expect = 0.47
Identities = 21/59 (35%), Positives = 29/59 (48%)
Frame = +2
Query: 218 LLF*QLQLRPKKHYHQQMQFLAMFVVAFHLQVYYHLPEQQALGHHQYQKLLGREPQRGN 394
L F Q L P++ H+ Q L F LQ H +QQ L HHQ +L ++ Q+ N
Sbjct: 460 LQFPQQPLHPQQQLHRPQQQLQPFQQQHALQQQLHQLQQQQLQHHQLAQLQQQQQQQHN 518
>ref|NP_061366.1| Pax transcription activation domain interacting protein [Mus
musculus] gi|4336734|gb|AAD17923.1| Pax transcription
activation domain interacting protein PTIP [Mus
musculus]
Length = 1056
Score = 35.4 bits (80), Expect = 0.47
Identities = 21/59 (35%), Positives = 29/59 (48%)
Frame = +2
Query: 218 LLF*QLQLRPKKHYHQQMQFLAMFVVAFHLQVYYHLPEQQALGHHQYQKLLGREPQRGN 394
L F Q L P++ H+ Q L F LQ H +QQ L HHQ +L ++ Q+ N
Sbjct: 460 LQFPQQPLHPQQQLHRPQQQLQPFQQQHALQQQLHQLQQQQLQHHQLAQLQQQQQQQHN 518
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,145,092
Number of Sequences: 1393205
Number of extensions: 10946352
Number of successful extensions: 34240
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 32827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34152
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
