Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009684A_C01 KMC009684A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH01672.1|AAH01672 Unknown (protein for MGC:2467) [Homo sapi... 34 1.1
gb|AAO41966.1| unknown protein [Arabidopsis thaliana] gi|2882739... 33 1.8
gb|AAD32578.1|AF124594_1 Scox-4 homeodomain protein [Cassiopea x... 33 1.8
ref|NP_191421.1| putative protein; protein id: At3g58620.1 [Arab... 33 1.8
ref|NP_565976.1| expressed protein; protein id: At2g42580.1, sup... 32 4.1
>gb|AAH01672.1|AAH01672 Unknown (protein for MGC:2467) [Homo sapiens]
Length = 61
Score = 33.9 bits (76), Expect = 1.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 299 THTHTWIPIFQCF*TGKPHRDRCSLAFLKPYMYISSFVPLMC 174
THTHT P+ C G P R R + LK + +P MC
Sbjct: 17 THTHTHTPLHCCTSVGPPSRTRTTRTRLKGLLIYHGLLPSMC 58
>gb|AAO41966.1| unknown protein [Arabidopsis thaliana] gi|28827390|gb|AAO50539.1|
unknown protein [Arabidopsis thaliana]
Length = 682
Score = 33.1 bits (74), Expect = 1.8
Identities = 15/19 (78%), Positives = 16/19 (83%)
Frame = -1
Query: 503 GEKVKEMFRPTHQALEDSV 447
GEKVKEM P+HQ LEDSV
Sbjct: 659 GEKVKEMVCPSHQLLEDSV 677
>gb|AAD32578.1|AF124594_1 Scox-4 homeodomain protein [Cassiopea xamachana]
Length = 133
Score = 33.1 bits (74), Expect = 1.8
Identities = 19/58 (32%), Positives = 32/58 (54%), Gaps = 2/58 (3%)
Frame = +2
Query: 152 EKISLLGSTSEEQRKKYTYKVSKMLT--NIYLYEVFLSKSTEKLVSTCACVSQRKAEI 319
EK+ G ++RK+ TY S+ L +LY +L+K K +S C+S+R+ +I
Sbjct: 62 EKMPWSGRNECKRRKRMTYTSSQTLELEKEFLYNRYLAKDRRKELSQMLCLSERQVKI 119
>ref|NP_191421.1| putative protein; protein id: At3g58620.1 [Arabidopsis thaliana]
gi|11357441|pir||T45682 hypothetical protein F14P22.210
- Arabidopsis thaliana gi|6735379|emb|CAB68200.1|
putative protein [Arabidopsis thaliana]
Length = 677
Score = 33.1 bits (74), Expect = 1.8
Identities = 15/19 (78%), Positives = 16/19 (83%)
Frame = -1
Query: 503 GEKVKEMFRPTHQALEDSV 447
GEKVKEM P+HQ LEDSV
Sbjct: 654 GEKVKEMVCPSHQLLEDSV 672
>ref|NP_565976.1| expressed protein; protein id: At2g42580.1, supported by cDNA:
gi_13605844 [Arabidopsis thaliana]
gi|13605845|gb|AAK32908.1|AF367321_1 At2g42580/F14N22.15
[Arabidopsis thaliana] gi|20198077|gb|AAD22995.2|
expressed protein [Arabidopsis thaliana]
gi|23506041|gb|AAN28880.1| At2g42580/F14N22.15
[Arabidopsis thaliana]
Length = 691
Score = 32.0 bits (71), Expect = 4.1
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = -1
Query: 503 GEKVKEMFRPTHQALEDSVR 444
G+KVKEM P+HQ LEDS++
Sbjct: 668 GDKVKEMVCPSHQFLEDSIK 687
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 399,737,823
Number of Sequences: 1393205
Number of extensions: 8128786
Number of successful extensions: 24355
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24351
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
