Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009659A_C01 KMC009659A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA31700.1| short product from PKn2 alternative splicing [Ip... 170 7e-42
dbj|BAA31699.1| PKn2 [Ipomoea nil] 170 7e-42
gb|AAO22744.1| putative homeodomain transcription factor KNAT6 [... 167 5e-41
ref|NP_683324.1| homeodomain transcription factor KNAT6; protein... 167 5e-41
gb|AAF79598.1|AC007945_18 F28C11.2 [Arabidopsis thaliana] 167 5e-41
>dbj|BAA31700.1| short product from PKn2 alternative splicing [Ipomoea nil]
Length = 237
Score = 170 bits (431), Expect = 7e-42
Identities = 75/94 (79%), Positives = 87/94 (91%)
Frame = -2
Query: 501 GSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTESDKIELAKATGLDQKQI 322
GSH+ +LKLEFSKKKKKGKLPKEARQTLL WW+ HYKWPYPTE+DKI LA++TGLDQKQI
Sbjct: 142 GSHLSSLKLEFSKKKKKGKLPKEARQTLLDWWSDHYKWPYPTEADKIALAESTGLDQKQI 201
Query: 321 NNWFINQRKRHWKPSENMQFSMMEHLTGRFLSDE 220
NNWFINQRKRHWKPSE+MQ ++ME+LTG+F S +
Sbjct: 202 NNWFINQRKRHWKPSESMQLAVMENLTGQFFSSD 235
>dbj|BAA31699.1| PKn2 [Ipomoea nil]
Length = 322
Score = 170 bits (431), Expect = 7e-42
Identities = 75/94 (79%), Positives = 87/94 (91%)
Frame = -2
Query: 501 GSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTESDKIELAKATGLDQKQI 322
GSH+ +LKLEFSKKKKKGKLPKEARQTLL WW+ HYKWPYPTE+DKI LA++TGLDQKQI
Sbjct: 227 GSHLSSLKLEFSKKKKKGKLPKEARQTLLDWWSDHYKWPYPTEADKIALAESTGLDQKQI 286
Query: 321 NNWFINQRKRHWKPSENMQFSMMEHLTGRFLSDE 220
NNWFINQRKRHWKPSE+MQ ++ME+LTG+F S +
Sbjct: 287 NNWFINQRKRHWKPSESMQLAVMENLTGQFFSSD 320
>gb|AAO22744.1| putative homeodomain transcription factor KNAT6 [Arabidopsis
thaliana] gi|28393913|gb|AAO42364.1| putative
homeodomain transcription factor KNAT6 [Arabidopsis
thaliana]
Length = 327
Score = 167 bits (424), Expect = 5e-41
Identities = 75/94 (79%), Positives = 82/94 (86%)
Frame = -2
Query: 501 GSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTESDKIELAKATGLDQKQI 322
GS I TLKLEFSKKKKKGKLP+EARQ LL WWN+HYKWPYPTE DKI LA ATGLDQKQI
Sbjct: 234 GSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQI 293
Query: 321 NNWFINQRKRHWKPSENMQFSMMEHLTGRFLSDE 220
NNWFINQRKRHWKPSENM F+MM+ +G F ++E
Sbjct: 294 NNWFINQRKRHWKPSENMPFAMMDDSSGSFFTEE 327
>ref|NP_683324.1| homeodomain transcription factor KNAT6; protein id: At1g23380.1,
supported by cDNA: gi_15991299 [Arabidopsis thaliana]
gi|9295701|gb|AAF87007.1|AC005292_16 F26F24.25
[Arabidopsis thaliana] gi|15991300|dbj|BAB69678.1|
homeodomain transcription factor KNAT6 [Arabidopsis
thaliana]
Length = 324
Score = 167 bits (424), Expect = 5e-41
Identities = 75/94 (79%), Positives = 82/94 (86%)
Frame = -2
Query: 501 GSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTESDKIELAKATGLDQKQI 322
GS I TLKLEFSKKKKKGKLP+EARQ LL WWN+HYKWPYPTE DKI LA ATGLDQKQI
Sbjct: 231 GSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQI 290
Query: 321 NNWFINQRKRHWKPSENMQFSMMEHLTGRFLSDE 220
NNWFINQRKRHWKPSENM F+MM+ +G F ++E
Sbjct: 291 NNWFINQRKRHWKPSENMPFAMMDDSSGSFFTEE 324
>gb|AAF79598.1|AC007945_18 F28C11.2 [Arabidopsis thaliana]
Length = 344
Score = 167 bits (424), Expect = 5e-41
Identities = 75/94 (79%), Positives = 82/94 (86%)
Frame = -2
Query: 501 GSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTESDKIELAKATGLDQKQI 322
GS I TLKLEFSKKKKKGKLP+EARQ LL WWN+HYKWPYPTE DKI LA ATGLDQKQI
Sbjct: 251 GSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLDQKQI 310
Query: 321 NNWFINQRKRHWKPSENMQFSMMEHLTGRFLSDE 220
NNWFINQRKRHWKPSENM F+MM+ +G F ++E
Sbjct: 311 NNWFINQRKRHWKPSENMPFAMMDDSSGSFFTEE 344
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,828,441
Number of Sequences: 1393205
Number of extensions: 8636298
Number of successful extensions: 25603
Number of sequences better than 10.0: 1290
Number of HSP's better than 10.0 without gapping: 24835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25584
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
