Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009655A_C01 KMC009655A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E86167 protein F21B7.29 [imported] - Arabidopsis thaliana g... 62 5e-09
ref|NP_171865.1| hypothetical protein; protein id: At1g03687.1 [... 62 5e-09
ref|NP_703515.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.2
ref|NP_562232.1| two-component sensor histidine kinase [Clostrid... 31 7.2
>pir||E86167 protein F21B7.29 [imported] - Arabidopsis thaliana
gi|9280650|gb|AAF86519.1|AC002560_12 F21B7.29
[Arabidopsis thaliana]
Length = 407
Score = 61.6 bits (148), Expect = 5e-09
Identities = 31/43 (72%), Positives = 37/43 (85%)
Frame = -2
Query: 509 VSSIELDKQEEAVEHALTVLLEALTNRRLRMGRSITRKVRHTI 381
+SS ELDKQ +AVE AL +LL++LT RRLRMGRSITRK R+TI
Sbjct: 362 LSSYELDKQADAVEEALVILLDSLTGRRLRMGRSITRKGRNTI 404
>ref|NP_171865.1| hypothetical protein; protein id: At1g03687.1 [Arabidopsis
thaliana] gi|7452036|pir||T00892 hypothetical protein
F21B7.6 - Arabidopsis thaliana
Length = 350
Score = 61.6 bits (148), Expect = 5e-09
Identities = 31/43 (72%), Positives = 37/43 (85%)
Frame = -2
Query: 509 VSSIELDKQEEAVEHALTVLLEALTNRRLRMGRSITRKVRHTI 381
+SS ELDKQ +AVE AL +LL++LT RRLRMGRSITRK R+TI
Sbjct: 305 LSSYELDKQADAVEEALVILLDSLTGRRLRMGRSITRKGRNTI 347
>ref|NP_703515.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504657|emb|CAD51535.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 477
Score = 32.0 bits (71), Expect = 4.2
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -2
Query: 215 FHVLNFSSKNDLWNLPSIYYMIDAISSYIVFLVTEYQVKHI 93
+H+L+ + KN+ +N S+ Y++ I Y+ + T Q+K I
Sbjct: 358 YHILHIAVKNNYYNYESLEYILFNIKKYLSHMNTTRQIKFI 398
>ref|NP_562232.1| two-component sensor histidine kinase [Clostridium perfringens]
gi|18144978|dbj|BAB81022.1| two-component sensor
histidine kinase [Clostridium perfringens str. 13]
Length = 821
Score = 31.2 bits (69), Expect = 7.2
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = -2
Query: 269 VVTYTRIFQFLHINV*HRFHVLNFSSKNDLWNLPSIYYMIDAISSYIVFLVTEYQVKHI* 90
V+ T I Q L++N + NF ++NL + ++ IS I LV +Q + I
Sbjct: 188 VILVTIILQILNVNYNIGIYTYNF-----IYNLTLVLIVLTYISCIIFCLVRIFQFREIT 242
Query: 89 YLVIV 75
YLVI+
Sbjct: 243 YLVIM 247
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,456,521
Number of Sequences: 1393205
Number of extensions: 7551393
Number of successful extensions: 11834
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11828
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
