Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009650A_C01 KMC009650A_c01
(462 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC29246.1| unnamed protein product [Mus musculus] 35 0.29
ref|ZP_00047374.1| hypothetical protein [Lactobacillus gasseri] 33 1.1
ref|XP_217199.1| hypothetical protein XP_217199 [Rattus norvegicus] 33 1.9
dbj|BAC36815.1| unnamed protein product [Mus musculus] 32 2.4
ref|XP_134988.1| similar to KIAA1164 protein [Homo sapiens] [Mus... 32 2.4
>dbj|BAC29246.1| unnamed protein product [Mus musculus]
Length = 589
Score = 35.4 bits (80), Expect = 0.29
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -1
Query: 447 PEGTVFSGQHNQVQLGSQRRRFRYLGQRSQNQLDCSPTSSTPYGHQGQPSQA-PLRDPPP 271
PEG G ++Q RR +Y ++ Q Q + T+ + QGQP+QA P P
Sbjct: 515 PEGISDLGLAKKLQEEEDRRASQYYQEQEQAQAVVTTTTPSTQAQQGQPAQASPSSIKQP 574
Query: 270 GNLELDPSETHIPDE 226
GN E E D+
Sbjct: 575 GNSERKRKEPREKDK 589
>ref|ZP_00047374.1| hypothetical protein [Lactobacillus gasseri]
Length = 263
Score = 33.5 bits (75), Expect = 1.1
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = -1
Query: 441 GTVFSGQHNQVQLGSQRRRFRYLGQRSQNQLDCSPTSSTPYGHQGQPSQAPLRDPPP 271
G+V + QH+ +QLG R+ R+LG+R Q++ + P+G G +AP+ P P
Sbjct: 178 GSVGNEQHSLIQLGKAGRK-RWLGKRPQSRGSVMNPNDHPHG--GGEGKAPVGRPQP 231
>ref|XP_217199.1| hypothetical protein XP_217199 [Rattus norvegicus]
Length = 95
Score = 32.7 bits (73), Expect = 1.9
Identities = 23/75 (30%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Frame = -1
Query: 447 PEGTVFSGQHNQVQLGSQRRRFRYLGQRSQNQLDCSPTSSTPYGHQGQPSQA-PLRDPPP 271
PEG ++Q RR +Y ++ Q Q + T+ + QGQP+QA P P
Sbjct: 20 PEGISDLELAKKLQEEEDRRASQYYQEQEQAQAAVATTTPSTQAQQGQPAQASPSSIKQP 79
Query: 270 GNLELDPSETHIPDE 226
GN E E D+
Sbjct: 80 GNSERKRKEPREKDK 94
>dbj|BAC36815.1| unnamed protein product [Mus musculus]
Length = 287
Score = 32.3 bits (72), Expect = 2.4
Identities = 23/75 (30%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Frame = -1
Query: 447 PEGTVFSGQHNQVQLGSQRRRFRYLGQRSQNQLDCSPTSSTPYGHQGQPSQA-PLRDPPP 271
PEG ++Q RR +Y ++ Q Q + T+ + QGQP+QA P P
Sbjct: 201 PEGISDLELAKKLQEEEDRRASQYYQEQEQAQAVVTTTTPSTQAQQGQPAQASPSSIKQP 260
Query: 270 GNLELDPSETHIPDE 226
GN E E D+
Sbjct: 261 GNSERKRKEPREKDK 275
>ref|XP_134988.1| similar to KIAA1164 protein [Homo sapiens] [Mus musculus]
Length = 268
Score = 32.3 bits (72), Expect = 2.4
Identities = 23/75 (30%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Frame = -1
Query: 447 PEGTVFSGQHNQVQLGSQRRRFRYLGQRSQNQLDCSPTSSTPYGHQGQPSQA-PLRDPPP 271
PEG ++Q RR +Y ++ Q Q + T+ + QGQP+QA P P
Sbjct: 182 PEGISDLELAKKLQEEEDRRASQYYQEQEQAQAVVTTTTPSTQAQQGQPAQASPSSIKQP 241
Query: 270 GNLELDPSETHIPDE 226
GN E E D+
Sbjct: 242 GNSERKRKEPREKDK 256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,056,680
Number of Sequences: 1393205
Number of extensions: 8004426
Number of successful extensions: 22888
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22860
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
