Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009643A_C01 KMC009643A_c01
(677 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_225570.1| similar to MCM10 minichromosome maintenance def... 37 0.19
ref|NP_522445.1| PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solan... 35 0.94
gb|EAA16244.1| fimbriae-associated protein Fap1 [Plasmodium yoel... 35 0.94
ref|NP_571010.1| nuclear oncoprotein skia; skiA [Danio rerio] gi... 35 1.2
dbj|BAB13384.1| KIAA1558 protein [Homo sapiens] 34 1.6
>ref|XP_225570.1| similar to MCM10 minichromosome maintenance deficient 10; homolog
of yeast MCM10 [Homo sapiens] [Rattus norvegicus]
Length = 874
Score = 37.4 bits (85), Expect = 0.19
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = -3
Query: 615 DVPSAALSDTALPSSPIHDLETSNEE-HDKLTSNNSHLKIMPEESSKDASNKQIDGGAEV 439
+VP++ + D+++P +P+ E +N+E D+L +K + +E K AS +Q A +
Sbjct: 112 EVPTSQVEDSSVPPAPVRSREKTNQELQDELKKLQEQMKSL-QEQLKAASLQQPPSSAPL 170
Query: 438 TNEDEAVDAAPPPKRAKI 385
+E PPP+ K+
Sbjct: 171 -HEPPGASLRPPPQEKKV 187
>ref|NP_522445.1| PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
gi|17431356|emb|CAD18035.1| PROBABLE TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
Length = 959
Score = 35.0 bits (79), Expect = 0.94
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Frame = -3
Query: 630 PSSPSDVPSAALSDTALPSSPIHDLETSNEEHDKLTSN----NSHLKIMPEESSKDASNK 463
P++ D P++A + A PS P DLE +E + L + + L P S +
Sbjct: 278 PAAEPDAPASAPPEPAEPSPPTVDLEAVRQEAEALLAELRGLMTPLAAAPVASPEPEPEP 337
Query: 462 QIDGGAEVTNEDEAVDAAPPPKRAK 388
+ + EVT E EA A P A+
Sbjct: 338 EPEAETEVTPEAEAEPEAEPEAEAE 362
>gb|EAA16244.1| fimbriae-associated protein Fap1 [Plasmodium yoelii yoelii]
Length = 3009
Score = 35.0 bits (79), Expect = 0.94
Identities = 17/55 (30%), Positives = 30/55 (53%)
Frame = -3
Query: 579 PSSPIHDLETSNEEHDKLTSNNSHLKIMPEESSKDASNKQIDGGAEVTNEDEAVD 415
PSSP H++ +E+D ++ + E+S + S +QI+G EV+ D +D
Sbjct: 2798 PSSPNHNIFVEEKENDNTSNKIKSIFDNQEKSIESLSGEQINGEIEVSENDSTLD 2852
>ref|NP_571010.1| nuclear oncoprotein skia; skiA [Danio rerio]
gi|3776292|gb|AAC64706.1| nuclear oncoprotein [Danio
rerio]
Length = 727
Score = 34.7 bits (78), Expect = 1.2
Identities = 27/86 (31%), Positives = 39/86 (44%), Gaps = 4/86 (4%)
Frame = -3
Query: 642 KVKGPSSPSDVP-SAALSDTALPSSPIH---DLETSNEEHDKLTSNNSHLKIMPEESSKD 475
++ G + PS P +AA + LP+SP D+E E ++LTS+ S L SS
Sbjct: 434 RLTGDTQPSPQPCAAATASKPLPASPEEHESDVEVEVESREELTSSLSSLSSPSFPSSSS 493
Query: 474 ASNKQIDGGAEVTNEDEAVDAAPPPK 397
A + G T AA PP+
Sbjct: 494 AKDLSSPSGPVATLPAVVTPAAGPPE 519
>dbj|BAB13384.1| KIAA1558 protein [Homo sapiens]
Length = 469
Score = 34.3 bits (77), Expect = 1.6
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = -3
Query: 645 SKVKGPSSPSDVPSAALSDTALPSSPIHDLETSNEEHDKLTSNNSHLKIMPEESSKDASN 466
+K G +S S+ S+ + +L S+ ++ETS E D LT + + L + PE + A
Sbjct: 367 TKETGWASFSEFTSSLSTKDSLRSNSPVEMETSTEPMDPLTPSAAALAVQPEAAGSVAME 426
Query: 465 KQIDGGAEVTNEDEAVD 415
DG + + D+ +
Sbjct: 427 ASSDGEEDAESTDKVTE 443
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,311,193
Number of Sequences: 1393205
Number of extensions: 11176759
Number of successful extensions: 40735
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 38601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40640
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
