Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009635A_C01 KMC009635A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172911.1| hypothetical protein common family; protein id:... 33 1.5
ref|NP_565281.1| unknown protein; protein id: At2g02060.1 [Arabi... 32 4.3
gb|EAA20514.1| hypothetical protein [Plasmodium yoelii yoelii] 31 7.4
gb|ZP_00000110.1| hypothetical protein [Ferroplasma acidarmanus] 31 9.6
pir||T13881 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 31 9.6
>ref|NP_172911.1| hypothetical protein common family; protein id: At1g14590.1
[Arabidopsis thaliana] gi|25372967|pir||E86280 protein
T5E21.9 [imported] - Arabidopsis thaliana
gi|7527728|gb|AAF63177.1|AC010657_13 T5E21.9
[Arabidopsis thaliana]
Length = 386
Score = 33.5 bits (75), Expect = 1.5
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = -3
Query: 511 KRMSVISWRVPQKCSLDSLR 452
K+ S SW+VPQ CSLDSLR
Sbjct: 347 KQSSGFSWKVPQNCSLDSLR 366
>ref|NP_565281.1| unknown protein; protein id: At2g02060.1 [Arabidopsis thaliana]
gi|25410958|pir||E84432 hypothetical protein At2g02060
[imported] - Arabidopsis thaliana
gi|4406788|gb|AAD20098.1| unknown protein [Arabidopsis
thaliana] gi|20197486|gb|AAM15094.1| unknown protein
[Arabidopsis thaliana]
Length = 626
Score = 32.0 bits (71), Expect = 4.3
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -3
Query: 502 SVISWRVPQKCSLDSLRP 449
S +W VPQ CSLDSLRP
Sbjct: 592 SGFTWSVPQNCSLDSLRP 609
>gb|EAA20514.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 428
Score = 31.2 bits (69), Expect = 7.4
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = +1
Query: 22 CIERGRSFKLHESNPAYQKKKKHESNPSVRS 114
C E + K HESN A++ + HESN + S
Sbjct: 330 CFEASKQKKSHESNEAHESNEAHESNEAHES 360
>gb|ZP_00000110.1| hypothetical protein [Ferroplasma acidarmanus]
Length = 538
Score = 30.8 bits (68), Expect = 9.6
Identities = 24/76 (31%), Positives = 36/76 (46%), Gaps = 7/76 (9%)
Frame = +2
Query: 41 LLNYMSLTLLIKKKKNMSLTRVYGHRYFPSIAKLIFLFILICLSCSYFPSSTILIFFTAV 220
LL Y+ L LL+ +KN + R+Y YF I +F FI++ + +P I++ T
Sbjct: 72 LLPYVVLPLLVFFRKNSVINRIY--LYFLFIG--LFSFIVLLFTYIVYPLMEIMVLLTIA 127
Query: 221 -------ELTQKENLP 247
L KEN P
Sbjct: 128 FYTDIIDNLYYKENKP 143
>pir||T13881 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Chlorogonium elongatum mitochondrion
gi|3413803|emb|CAA73990.1| NADH dehydrogenase subunit 4
[Chlorogonium elongatum]
Length = 460
Score = 30.8 bits (68), Expect = 9.6
Identities = 23/75 (30%), Positives = 36/75 (47%), Gaps = 10/75 (13%)
Frame = -3
Query: 412 SCSCMCQFMFGTTMDSEGRINFVK----------KLVCLIIDFDEKEVDPYSNTLISCSS 263
+C C+C F+F +T+ + +I+ K LV L I F E YS+T + +
Sbjct: 263 ACMCLCSFLF-STLSTIRQIDLKKIVAYSSIAHMALVTLTI-FSMSEFSTYSSTFMMIAH 320
Query: 262 GLLHGWKVFLLG*LY 218
GL+ L+G LY
Sbjct: 321 GLVSPGLFLLVGLLY 335
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,709,290
Number of Sequences: 1393205
Number of extensions: 8272652
Number of successful extensions: 17579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17577
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
