Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009629A_C01 KMC009629A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_494936.1| Putative secreted or extracellular protein fami... 67 2e-10
ref|NP_494944.1| Putative protein, nematode specific [Caenorhabd... 67 2e-10
ref|NP_495859.1| Putative secreted or extracellular protein prec... 67 2e-10
ref|NP_496274.1| Putative protein, nematode specific (15.6 kD) [... 66 3e-10
dbj|BAC25637.1| unnamed protein product [Mus musculus] 65 5e-10
>ref|NP_494936.1| Putative secreted or extracellular protein family member precursor,
nematode specific [Caenorhabditis elegans]
gi|7496569|pir||T15651 hypothetical protein C27A2.5 -
Caenorhabditis elegans gi|13592364|gb|AAK31463.1|
Hypothetical protein C27A2.5 [Caenorhabditis elegans]
Length = 188
Score = 67.0 bits (162), Expect = 2e-10
Identities = 33/74 (44%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 324 GC*NGCCCCRWWYCCI*NGGYCC*YAGCCGGTCCSGGTC-CCGTCCCGCASCGSTCGCCC 500
GC GCCCCR CC CC C TCC C CC CCCGC CG CGCC
Sbjct: 82 GC--GCCCCRPKCCC------CCRRCCTCCRTCCCTRCCTCCRPCCCGC-GCG--CGCCG 130
Query: 501 CGSVSSLKGALRSM 542
CG + +L+++
Sbjct: 131 CGGGGRKRRSLQNL 144
Score = 43.1 bits (100), Expect = 0.003
Identities = 25/61 (40%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Frame = +3
Query: 336 GCCCCRWWYCCI*NGGYCC*YAGCCGGTCCSGGTCCCGTCCCG---CASCGSTCGCC--C 500
GC CC G C GCCG C GG CG CCC C C C CC C
Sbjct: 62 GCGCC----------GCGC---GCCG--CGGGGGGGCGCCCCRPKCCCCCRRCCTCCRTC 106
Query: 501 C 503
C
Sbjct: 107 C 107
Score = 42.7 bits (99), Expect = 0.004
Identities = 17/29 (58%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +3
Query: 429 GGTCCCGTCCCGCASC----GSTCGCCCC 503
GG CCG C CGC C G CGCCCC
Sbjct: 61 GGCGCCG-CGCGCCGCGGGGGGGCGCCCC 88
Score = 40.0 bits (92), Expect = 0.023
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 14/48 (29%)
Frame = +3
Query: 402 GCCGGTCCSGGTCCCG--------------TCCCGCASCGSTCGCCCC 503
GCCG C G C CG CCC C C + C CCC
Sbjct: 64 GCCG---CGCGCCGCGGGGGGGCGCCCCRPKCCCCCRRCCTCCRTCCC 108
>ref|NP_494944.1| Putative protein, nematode specific [Caenorhabditis elegans]
gi|14573757|gb|AAK68158.1|U55854_2 Hypothetical protein
C04G6.10 [Caenorhabditis elegans]
Length = 166
Score = 67.0 bits (162), Expect = 2e-10
Identities = 33/74 (44%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 324 GC*NGCCCCRWWYCCI*NGGYCC*YAGCCGGTCCSGGTC-CCGTCCCGCASCGSTCGCCC 500
GC GCCCCR CC CC C TCC C CC CCCGC CG CGCC
Sbjct: 82 GC--GCCCCRPRCCC------CCRRCCTCCRTCCCTRCCTCCRPCCCGC-GCG--CGCCG 130
Query: 501 CGSVSSLKGALRSM 542
CG + +L+++
Sbjct: 131 CGGGGRKRRSLQNL 144
Score = 45.8 bits (107), Expect = 4e-04
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = +3
Query: 432 GTCCCGTCCCGCASCGSTCGCCCC 503
G C CG CCGC G CGCCCC
Sbjct: 65 GCCGCGCGCCGCGGGGGGCGCCCC 88
Score = 38.1 bits (87), Expect = 0.087
Identities = 22/56 (39%), Positives = 22/56 (39%)
Frame = +3
Query: 336 GCCCCRWWYCCI*NGGYCC*YAGCCGGTCCSGGTCCCGTCCCGCASCGSTCGCCCC 503
GC CC G C GCCG C GG CG CCC CCCC
Sbjct: 63 GCGCC----------GCGC---GCCG---CGGGGGGCGCCCC-------RPRCCCC 95
>ref|NP_495859.1| Putative secreted or extracellular protein precursor, nematode
specific [Caenorhabditis elegans] gi|7506829|pir||T24272
hypothetical protein T01B7.8 - Caenorhabditis elegans
gi|3879236|emb|CAA91301.1| Hypothetical protein T01B7.8
[Caenorhabditis elegans]
Length = 164
Score = 67.0 bits (162), Expect = 2e-10
Identities = 33/74 (44%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 324 GC*NGCCCCRWWYCCI*NGGYCC*YAGCCGGTCCSGGTC-CCGTCCCGCASCGSTCGCCC 500
GC GCCCCR CC CC C TCC C CC CCCGC CG CGCC
Sbjct: 81 GC--GCCCCRPRCCC------CCRRCCTCCRTCCCTRCCTCCRPCCCGC-GCG--CGCCG 129
Query: 501 CGSVSSLKGALRSM 542
CG + +L+++
Sbjct: 130 CGGGGRKRRSLQNL 143
Score = 45.8 bits (107), Expect = 4e-04
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = +3
Query: 432 GTCCCGTCCCGCASCGSTCGCCCC 503
G C CG CCGC G CGCCCC
Sbjct: 64 GCCGCGCGCCGCGGGGGGCGCCCC 87
Score = 38.1 bits (87), Expect = 0.087
Identities = 22/56 (39%), Positives = 22/56 (39%)
Frame = +3
Query: 336 GCCCCRWWYCCI*NGGYCC*YAGCCGGTCCSGGTCCCGTCCCGCASCGSTCGCCCC 503
GC CC G C GCCG C GG CG CCC CCCC
Sbjct: 62 GCGCC----------GCGC---GCCG---CGGGGGGCGCCCC-------RPRCCCC 94
>ref|NP_496274.1| Putative protein, nematode specific (15.6 kD) [Caenorhabditis
elegans] gi|7495472|pir||T18975 hypothetical protein
C06A1.6 - Caenorhabditis elegans
gi|3874010|emb|CAA90055.1| Hypothetical protein C06A1.6
[Caenorhabditis elegans]
Length = 152
Score = 66.2 bits (160), Expect = 3e-10
Identities = 29/61 (47%), Positives = 30/61 (48%)
Frame = +3
Query: 324 GC*NGCCCCRWWYCCI*NGGYCC*YAGCCGGTCCSGGTCCCGTCCCGCASCGSTCGCCCC 503
GC GCCCCR CC CC CC CC+ CC CCCGC CGC CC
Sbjct: 68 GC--GCCCCRPRCCCCCRPKCCC---TCCRTCCCTRCCTCCRPCCCGCG-----CGCGCC 117
Query: 504 G 506
G
Sbjct: 118 G 118
Score = 60.8 bits (146), Expect = 1e-08
Identities = 27/68 (39%), Positives = 32/68 (46%)
Frame = +3
Query: 339 CCCCRWWYCCI*NGGYCC*YAGCCGGTCCSGGTCCCGTCCCGCASCGSTCGCCCCGSVSS 518
CCCCR CC CC CC+ CC CCCGC CG CGCC CG
Sbjct: 79 CCCCRPKCCCT-----------CCRTCCCTRCCTCCRPCCCGC-GCG--CGCCGCGGGGR 124
Query: 519 LKGALRSM 542
+ +L+ +
Sbjct: 125 KRRSLQKL 132
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/46 (47%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +3
Query: 375 NGGYCC*YAGCCGGTCCSGGTCCCGTCCCG---CASCGSTCGCCCC 503
NGG C GCCG C GG CG CCC C C C C CC
Sbjct: 53 NGGCC----GCCG---CGGGGGGCGCCCCRPRCCCCCRPKCCCTCC 91
>dbj|BAC25637.1| unnamed protein product [Mus musculus]
Length = 129
Score = 65.5 bits (158), Expect = 5e-10
Identities = 36/92 (39%), Positives = 47/92 (50%), Gaps = 8/92 (8%)
Frame = +3
Query: 333 NGCCCCRWWYCCI*NGGYC-C*YAGCCGGTCCSG---GTCCCGTC-CCGCASCG-STCGC 494
+ C CR++ CC GG C C GCCG C G G C CG C CGC CG CGC
Sbjct: 15 SSCTTCRYYRCC---GGCCGCCGCGCCGCGGCGGCGCGGCGCGGCGGCGCGGCGCGGCGC 71
Query: 495 C--CCGSVSSLKGALRSMFPSSSSS*IAAIAV 584
C CCG + + + P ++++ A+AV
Sbjct: 72 CGGCCGCCGCCRPTVVLLLPPAAAAAPVAVAV 103
Score = 58.9 bits (141), Expect = 5e-08
Identities = 31/62 (50%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 327 C*NGCCCCRWWYCCI*NGGYCC*YAGC-CGGTCCSG-GTCCCGTC-CCGCASCGSTCGCC 497
C GCC C CC G C GC CGG C G G C CG C C GC CG CGCC
Sbjct: 25 CCGGCCGCCGCGCC--GCGGC---GGCGCGGCGCGGCGGCGCGGCGCGGCGCCGGCCGCC 79
Query: 498 CC 503
C
Sbjct: 80 GC 81
Score = 36.6 bits (83), Expect = 0.25
Identities = 25/77 (32%), Positives = 26/77 (33%), Gaps = 18/77 (23%)
Frame = +3
Query: 324 GC*NGCCCCRWWYCCI*NGGYCC*YAGCCGGT------------------CCSGGTCCCG 449
GC G C C CC G CC GCC T + G CC
Sbjct: 58 GCGCGGCGCGGCGCC----GGCCGCCGCCRPTVVLLLPPAAAAAPVAVAVAVAVGRGCCH 113
Query: 450 TCCCGCASCGSTCGCCC 500
CC CGS CCC
Sbjct: 114 HKCCCQQKCGSK-KCCC 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,392,038
Number of Sequences: 1393205
Number of extensions: 12401802
Number of successful extensions: 214727
Number of sequences better than 10.0: 4614
Number of HSP's better than 10.0 without gapping: 73996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139955
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
