Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009590A_C01 KMC009590A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA33190.1| MURF2 protein (AA 1-348) [Crithidia fasciculata] 32 4.0
ref|NP_177738.1| unknown protein; protein id: At1g76110.1, suppo... 32 4.0
ref|NP_391047.1| two-component sensor histidine kinase [Bacillus... 32 5.2
pir||A35848 competence regulatory protein ComP - Bacillus subtil... 32 5.2
emb|CAA33456.1| NSP1 peptide (AA 1-269) [Saccharomyces cerevisiae] 31 6.9
>emb|CAA33190.1| MURF2 protein (AA 1-348) [Crithidia fasciculata]
Length = 347
Score = 32.0 bits (71), Expect = 4.0
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = -2
Query: 501 VVIDMLYYNMYLYIFFKVYKIYGL*FICFLLL 406
++ D L++N LYI F + + + FICFLLL
Sbjct: 172 IIYDFLFFNFDLYISFLMCDLIYVDFICFLLL 203
>ref|NP_177738.1| unknown protein; protein id: At1g76110.1, supported by cDNA:
gi_20466327 [Arabidopsis thaliana]
gi|25405003|pir||B96789 protein T23E18.4 [imported] -
Arabidopsis thaliana
gi|6573729|gb|AAF17649.1|AC009978_25 T23E18.4
[Arabidopsis thaliana] gi|20466328|gb|AAM20481.1|
unknown protein [Arabidopsis thaliana]
Length = 338
Score = 32.0 bits (71), Expect = 4.0
Identities = 16/28 (57%), Positives = 21/28 (74%)
Frame = -3
Query: 395 QVVPHEK*RELGFVFRFTATTPRACFVV 312
+VV +K RE+G VFRF+ATT A FV+
Sbjct: 86 KVVVEKKWREVGGVFRFSATTTSASFVL 113
>ref|NP_391047.1| two-component sensor histidine kinase [Bacillus subtilis]
gi|7531265|sp|Q99027|COMP_BACSU Sensor protein comP
gi|7475969|pir||B69604 two-component sensor histidine
kinase involved in early compet comP - Bacillus subtilis
gi|1934771|emb|CAB07903.1| histidine kinase [Bacillus
subtilis] gi|2635664|emb|CAB15157.1| two-component
sensor histidine kinase [Bacillus subtilis subsp.
subtilis str. 168]
Length = 769
Score = 31.6 bits (70), Expect = 5.2
Identities = 18/53 (33%), Positives = 35/53 (65%), Gaps = 1/53 (1%)
Frame = -1
Query: 361 VLCSGSQLPPQEHVLL*VDLGHSFFLFPNEEFFVFLNVLRV-HILYVKEKRKT 206
+L SG ++ ++ L+ ++ +SFFLF FF FL+++ + +IL V +KR++
Sbjct: 93 ILRSGKKIHLKDFDLVTLNRPYSFFLFVLPLFFYFLSIICIFYILKVNKKRRS 145
>pir||A35848 competence regulatory protein ComP - Bacillus subtilis
gi|142700|gb|AAA22319.1| P competence protein (ttg start
codon) (put.); putative gi|580843|emb|CAA37957.1| sensor
signal-transduction protein [Bacillus subtilis]
Length = 769
Score = 31.6 bits (70), Expect = 5.2
Identities = 18/53 (33%), Positives = 35/53 (65%), Gaps = 1/53 (1%)
Frame = -1
Query: 361 VLCSGSQLPPQEHVLL*VDLGHSFFLFPNEEFFVFLNVLRV-HILYVKEKRKT 206
+L SG ++ ++ L+ ++ +SFFLF FF FL+++ + +IL V +KR++
Sbjct: 93 ILRSGKKIHLKDFDLVTLNRPYSFFLFVLPLFFYFLSIICIFYILKVNKKRRS 145
>emb|CAA33456.1| NSP1 peptide (AA 1-269) [Saccharomyces cerevisiae]
Length = 269
Score = 31.2 bits (69), Expect = 6.9
Identities = 14/26 (53%), Positives = 16/26 (60%)
Frame = -3
Query: 485 YIIICICIYFLKYIRYMAYDLYAFCF 408
YI ICICIYFL + + Y FCF
Sbjct: 223 YIYICICIYFLDFSAF-HLTFYYFCF 247
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,339,172
Number of Sequences: 1393205
Number of extensions: 8961486
Number of successful extensions: 20457
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20445
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
