Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009545A_C01 KMC009545A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89960.1| putative 4-coumarate-CoA ligase [Oryza sativa (j... 105 3e-22
ref|NP_201143.1| 4-coumarate-CoA ligase-like protein; protein id... 96 2e-19
dbj|BAB89961.1| putative 4-coumarate-CoA ligase [Oryza sativa (j... 88 5e-17
ref|NP_192425.1| 4-coumarate--CoA ligase - like protein; protein... 81 8e-15
gb|AAF79611.1|AC027665_12 F5M15.17 [Arabidopsis thaliana] 80 2e-14
>dbj|BAB89960.1| putative 4-coumarate-CoA ligase [Oryza sativa (japonica
cultivar-group)] gi|20161607|dbj|BAB90527.1| putative
4-coumarate-CoA ligase [Oryza sativa (japonica
cultivar-group)]
Length = 542
Score = 105 bits (262), Expect = 3e-22
Identities = 51/64 (79%), Positives = 59/64 (91%)
Frame = -1
Query: 515 AFVVRKPGSNITAAQVMEFVAKQVAPYKKIRRVSFINSIPKSPAGKILRRELVDQALSSG 336
AF+VR+PGSNIT QVM++VAKQVAPYKK+RRV+F+ +IPKSPAGKILRRELV QALS G
Sbjct: 479 AFIVRQPGSNITKEQVMDYVAKQVAPYKKVRRVAFVTAIPKSPAGKILRRELVQQALSMG 538
Query: 335 ASKL 324
ASKL
Sbjct: 539 ASKL 542
>ref|NP_201143.1| 4-coumarate-CoA ligase-like protein; protein id: At5g63380.1
[Arabidopsis thaliana] gi|22531241|gb|AAM97124.1|
4-coumarate-CoA ligase-like protein [Arabidopsis
thaliana]
Length = 562
Score = 95.9 bits (237), Expect = 2e-19
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = -1
Query: 515 AFVVRKPGSNITAAQVMEFVAKQVAPYKKIRRVSFINSIPKSPAGKILRRELVDQALSSG 336
AF+VRKPGSN+ AQ+++FVAKQV PYKK+RRV+FIN+IPK+PAGKILRREL A+
Sbjct: 499 AFIVRKPGSNLNEAQIIDFVAKQVTPYKKVRRVAFINAIPKNPAGKILRRELTKIAVDGN 558
Query: 335 ASKL 324
ASKL
Sbjct: 559 ASKL 562
>dbj|BAB89961.1| putative 4-coumarate-CoA ligase [Oryza sativa (japonica
cultivar-group)] gi|20161608|dbj|BAB90528.1| putative
4-coumarate-CoA ligase [Oryza sativa (japonica
cultivar-group)]
Length = 579
Score = 88.2 bits (217), Expect = 5e-17
Identities = 43/59 (72%), Positives = 52/59 (87%)
Frame = -1
Query: 515 AFVVRKPGSNITAAQVMEFVAKQVAPYKKIRRVSFINSIPKSPAGKILRRELVDQALSS 339
AFVVR+PG+ +T QVM VAK VAPYKK+RRV+F+N+IPKSPAGKILRRELV QA++S
Sbjct: 517 AFVVRQPGAYLTEQQVMNCVAKHVAPYKKVRRVAFVNAIPKSPAGKILRRELVLQAMAS 575
>ref|NP_192425.1| 4-coumarate--CoA ligase - like protein; protein id: At4g05160.1,
supported by cDNA: gi_20258833 [Arabidopsis thaliana]
gi|25293418|pir||H85064 4-coumarate-CoA ligase-like
protein [imported] - Arabidopsis thaliana
gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like
protein [Arabidopsis thaliana]
gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA
ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1|
putative 4-coumarate--CoA ligase [Arabidopsis thaliana]
Length = 544
Score = 80.9 bits (198), Expect = 8e-15
Identities = 39/58 (67%), Positives = 47/58 (80%)
Frame = -1
Query: 515 AFVVRKPGSNITAAQVMEFVAKQVAPYKKIRRVSFINSIPKSPAGKILRRELVDQALS 342
AFVVR P S+IT + +F+AKQVAPYK++RRVSFI+ +PKS AGKILRRELV Q S
Sbjct: 485 AFVVRSPNSSITEQDIQKFIAKQVAPYKRLRRVSFISLVPKSAAGKILRRELVQQVRS 542
>gb|AAF79611.1|AC027665_12 F5M15.17 [Arabidopsis thaliana]
Length = 580
Score = 79.7 bits (195), Expect = 2e-14
Identities = 36/59 (61%), Positives = 52/59 (88%)
Frame = -1
Query: 515 AFVVRKPGSNITAAQVMEFVAKQVAPYKKIRRVSFINSIPKSPAGKILRRELVDQALSS 339
A+VVRK GS+++ +MEFVAKQVAPYK+IR+V+F++SIPK+P+GKILR++L+ A S+
Sbjct: 519 AYVVRKTGSSLSEKTIMEFVAKQVAPYKRIRKVAFVSSIPKNPSGKILRKDLIKIATSN 577
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,511,934
Number of Sequences: 1393205
Number of extensions: 8961305
Number of successful extensions: 22189
Number of sequences better than 10.0: 571
Number of HSP's better than 10.0 without gapping: 21605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22163
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
