Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009529A_C01 KMC009529A_c01
(416 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL29212.1|AF354454_1 putative acyl-CoA synthetase [Capsicum ... 66 1e-10
gb|AAM65672.1| 4-coumarate-CoA ligase-like protein [Arabidopsis ... 50 7e-06
ref|NP_190468.1| 4-coumarate-CoA ligase -like protein; protein i... 50 7e-06
emb|CAD70995.1| probable fatty acid transporter FAT2 [Neurospora... 44 4e-04
gb|EAA31566.1| hypothetical protein [Neurospora crassa] 44 4e-04
>gb|AAL29212.1|AF354454_1 putative acyl-CoA synthetase [Capsicum annuum]
Length = 523
Score = 65.9 bits (159), Expect = 1e-10
Identities = 31/42 (73%), Positives = 37/42 (87%)
Frame = -2
Query: 415 VPKKVFITDSLPKTATGKILRRLVAEHYVSQI*VTQVPSFGA 290
VPKKVF+TDSLPKTA+GKI RRLVAEH+++QI +VP FGA
Sbjct: 482 VPKKVFMTDSLPKTASGKIQRRLVAEHFLAQISTAKVPKFGA 523
>gb|AAM65672.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana]
Length = 514
Score = 50.1 bits (118), Expect = 7e-06
Identities = 21/31 (67%), Positives = 29/31 (92%)
Frame = -2
Query: 415 VPKKVFITDSLPKTATGKILRRLVAEHYVSQ 323
VPK+VFITD+LPKTA+GKI RR+VA+H++ +
Sbjct: 483 VPKRVFITDNLPKTASGKIQRRIVAQHFLEK 513
>ref|NP_190468.1| 4-coumarate-CoA ligase -like protein; protein id: At3g48990.1,
supported by cDNA: 41541., supported by cDNA:
gi_15292780, supported by cDNA: gi_17065365, supported
by cDNA: gi_20799714 [Arabidopsis thaliana]
gi|11271963|pir||T46131 4-coumarate-CoA ligase-like
protein - Arabidopsis thaliana
gi|6522567|emb|CAB62011.1| 4-coumarate-CoA ligase-like
protein [Arabidopsis thaliana]
gi|15292781|gb|AAK92759.1| putative 4-coumarate-CoA
ligase [Arabidopsis thaliana] gi|17065366|gb|AAL32837.1|
4-coumarate-CoA ligase-like protein [Arabidopsis
thaliana] gi|20799715|gb|AAM28620.1|AF503762_1 adenosine
monophosphate binding protein 3 AMPBP3 [Arabidopsis
thaliana] gi|21436319|gb|AAM51329.1| putative
4-coumarate-CoA ligase [Arabidopsis thaliana]
gi|28059248|gb|AAO30039.1| 4-coumarate-CoA ligase-like
protein [Arabidopsis thaliana]
Length = 514
Score = 50.1 bits (118), Expect = 7e-06
Identities = 21/31 (67%), Positives = 29/31 (92%)
Frame = -2
Query: 415 VPKKVFITDSLPKTATGKILRRLVAEHYVSQ 323
VPK+VFITD+LPKTA+GKI RR+VA+H++ +
Sbjct: 483 VPKRVFITDNLPKTASGKIQRRIVAQHFLEK 513
>emb|CAD70995.1| probable fatty acid transporter FAT2 [Neurospora crassa]
Length = 522
Score = 44.3 bits (103), Expect = 4e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = -2
Query: 415 VPKKVFITDSLPKTATGKILRRLVAEHYVSQ 323
VPKK++ TD +PKTATGKI RR+VAE + +
Sbjct: 485 VPKKIYFTDVMPKTATGKIQRRIVAEEMLKK 515
>gb|EAA31566.1| hypothetical protein [Neurospora crassa]
Length = 531
Score = 44.3 bits (103), Expect = 4e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = -2
Query: 415 VPKKVFITDSLPKTATGKILRRLVAEHYVSQ 323
VPKK++ TD +PKTATGKI RR+VAE + +
Sbjct: 485 VPKKIYFTDVMPKTATGKIQRRIVAEEMLKK 515
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,780,427
Number of Sequences: 1393205
Number of extensions: 7269427
Number of successful extensions: 19073
Number of sequences better than 10.0: 230
Number of HSP's better than 10.0 without gapping: 17307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19068
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
