Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009493A_C01 KMC009493A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_LYCES Photosystem II 10 kDa polypeptide, chloropl... 188 3e-47
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 187 7e-47
emb|CAA99757.1| photosystem II 10 kD polypeptide [Lycopersicon e... 186 1e-46
emb|CAA27989.1| ST-LS1 protein (AA 1-138) [Solanum tuberosum] 184 6e-46
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 182 2e-45
>sp|Q40163|PSBR_LYCES Photosystem II 10 kDa polypeptide, chloroplast precursor
gi|1217642|emb|CAA65231.1| PSII polypeptide
[Lycopersicon esculentum]
Length = 138
Score = 188 bits (478), Expect = 3e-47
Identities = 89/107 (83%), Positives = 99/107 (92%)
Frame = -3
Query: 542 SASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSP 363
S+SF+VVASG KK+KTD PYG G M LR+GVDASGRKP+GKGVYQYVDKYGANVDGYSP
Sbjct: 32 SSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSP 91
Query: 362 IYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 222
IY+T +WSP+GDVY GGTTGLAIWAVTLLG+LAGGALLVYNTSAL+Q
Sbjct: 92 IYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplast precursor (Light
inducible tissue-specific ST-LS1 protein)
gi|82277|pir||S00411 photosystem II 10K protein
precursor - potato gi|21489|emb|CAA28450.1| ST-LS1
protein [Solanum tuberosum]
Length = 138
Score = 187 bits (475), Expect = 7e-47
Identities = 88/107 (82%), Positives = 99/107 (92%)
Frame = -3
Query: 542 SASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSP 363
S+SF+VVASG KK+KTD PYG G M LR+GVDASGRKP+GKGVYQYVDKYGANVDGYSP
Sbjct: 32 SSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSP 91
Query: 362 IYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 222
IY+T +WSP+GDVY GGTTGLAIWAVTL+G+LAGGALLVYNTSAL+Q
Sbjct: 92 IYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>emb|CAA99757.1| photosystem II 10 kD polypeptide [Lycopersicon esculentum]
Length = 130
Score = 186 bits (473), Expect = 1e-46
Identities = 88/107 (82%), Positives = 98/107 (91%)
Frame = -3
Query: 542 SASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSP 363
S+SF+VVA G KK+KTD PYG G M LR+GVDASGRKP+GKGVYQYVDKYGANVDGYSP
Sbjct: 24 SSSFKVVARGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSP 83
Query: 362 IYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 222
IY+T +WSP+GDVY GGTTGLAIWAVTLLG+LAGGALLVYNTSAL+Q
Sbjct: 84 IYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 130
>emb|CAA27989.1| ST-LS1 protein (AA 1-138) [Solanum tuberosum]
Length = 138
Score = 184 bits (467), Expect = 6e-46
Identities = 86/107 (80%), Positives = 98/107 (91%)
Frame = -3
Query: 542 SASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSP 363
S+ F+VVASG KK+KTD PYG G M LR+G+DASGRKP+GKGVYQYVDKYGANVDGYSP
Sbjct: 32 SSPFKVVASGVKKLKTDKPYGINGSMALRDGLDASGRKPKGKGVYQYVDKYGANVDGYSP 91
Query: 362 IYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 222
IY+T +WSP+GDVY GGTTGLAIWAVTL+G+LAGGALLVYNTSAL+Q
Sbjct: 92 IYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplast precursor (PII10)
gi|322764|pir||S32021 photosystem II 10K protein -
common tobacco gi|22669|emb|CAA49693.1| NtpII10
[Nicotiana tabacum]
Length = 136
Score = 182 bits (463), Expect = 2e-45
Identities = 86/107 (80%), Positives = 98/107 (91%)
Frame = -3
Query: 542 SASFRVVASGGKKIKTDTPYGTGGGMNLRNGVDASGRKPRGKGVYQYVDKYGANVDGYSP 363
S+SFRV ASG KK+KTD PYG G M+LR+GVDASGRK +GKGVYQ+VDKYGANVDGYSP
Sbjct: 30 SSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSP 89
Query: 362 IYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNTSALSQ 222
IY+T DWSP+GDVY GGTTGLAIWAVTL+G+LAGGALLV+NTSAL+Q
Sbjct: 90 IYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,901,525
Number of Sequences: 1393205
Number of extensions: 12073949
Number of successful extensions: 46436
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 42686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46349
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
