Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009490A_C01 KMC009490A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566603.1| expressed protein; protein id: At3g18240.1, sup... 138 4e-32
ref|NP_567628.1| putative protein; protein id: At4g21460.1, supp... 134 8e-31
pir||T05154 hypothetical protein F18E5.80 - Arabidopsis thaliana... 130 2e-29
pir||S23737 proline-rich protein precursor - kidney bean gi|2104... 63 2e-09
ref|NP_177518.1| hypothetical protein; protein id: At1g73770.1 [... 57 1e-07
>ref|NP_566603.1| expressed protein; protein id: At3g18240.1, supported by cDNA:
gi_11908119, supported by cDNA: gi_13194809, supported
by cDNA: gi_13265398 [Arabidopsis thaliana]
gi|9279658|dbj|BAB01174.1|
emb|CAA18710.1~gene_id:MIE15.3~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|11692818|gb|AAG40012.1|AF324661_1 AT3g18240
[Arabidopsis thaliana]
gi|11908120|gb|AAG41489.1|AF326907_1 unknown protein
[Arabidopsis thaliana]
gi|13194810|gb|AAK15567.1|AF349520_1 unknown protein
[Arabidopsis thaliana] gi|21536541|gb|AAM60873.1|
unknown [Arabidopsis thaliana]
Length = 419
Score = 138 bits (348), Expect = 4e-32
Identities = 77/195 (39%), Positives = 115/195 (58%), Gaps = 9/195 (4%)
Frame = +2
Query: 11 QNASLLYTRNLLLHSSSTTAAPPPP---PPSPPHSPPSQIVSGPGSSPPMKPPKAPFLKN 181
+NASL R +L + +P P P + P +P + S P++ +
Sbjct: 7 RNASLCARRIILSPRITHQISPNVPFLAPIAAPAAPKFRFFSSESGENSTTAPESSPTDS 66
Query: 182 PKKSRTSI----TKSSKR*FDQYL-KGDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELR 346
P+K + K K ++Y +G+E+ LP + EA+L RRL KH +TDDE+++++
Sbjct: 67 PEKKDLVVEDVSNKELKSRIEKYFNEGNEDALPGVIEALLQRRLVDKHAETDDELLEKIE 126
Query: 347 MGPL-DDVSDREFEEDFEEAHQTDEEIDDLYNARDVVQKRMVHDEYFNMDPKKWDEMVQD 523
P DDV D +FE DFEEAH TDEE++DLYN+ + V ++M +E+FNMD KKWD M+++
Sbjct: 127 SLPFKDDVKDEDFESDFEEAHSTDEELEDLYNSPEYVAEKMRKNEFFNMDDKKWDHMIRE 186
Query: 524 GVNHGFLKDTK*CEE 568
G+ HG L DTK CEE
Sbjct: 187 GIQHGCLTDTKECEE 201
>ref|NP_567628.1| putative protein; protein id: At4g21460.1, supported by cDNA:
10221. [Arabidopsis thaliana]
Length = 415
Score = 134 bits (337), Expect = 8e-31
Identities = 78/192 (40%), Positives = 111/192 (57%), Gaps = 6/192 (3%)
Frame = +2
Query: 11 QNASLLYTRNLLLHSSSTTAAPPPPPPSPPHSPPSQIVSGP-GSSPPMKPPKAPFLKNPK 187
+NASL R ++L S + P P + P P + S G + +P + K
Sbjct: 7 RNASLC-ARRIILSSRISPNVPFLTPIAAPAPPKFRFFSSESGENSTTATESSPTDSSDK 65
Query: 188 KSRTSITKSSK----R*FDQYLKGDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGP 355
K S+K R + +G+E+ LP + EA+L RRL KH +TDDE+M+++ P
Sbjct: 66 KDLVVKDVSNKELKSRIDKSFNEGNEDALPGVIEALLQRRLVDKHAETDDELMEKIESLP 125
Query: 356 L-DDVSDREFEEDFEEAHQTDEEIDDLYNARDVVQKRMVHDEYFNMDPKKWDEMVQDGVN 532
DDV D +FE DFEEAH TDEE++DLYN+ + V ++M E+FNMD KWD M+++G+
Sbjct: 126 FKDDVKDEDFESDFEEAHSTDEELEDLYNSPEYVAEKMRKKEFFNMDDNKWDHMIREGIQ 185
Query: 533 HGFLKDTK*CEE 568
HG L DTK CEE
Sbjct: 186 HGCLTDTKQCEE 197
>pir||T05154 hypothetical protein F18E5.80 - Arabidopsis thaliana
gi|3080390|emb|CAA18710.1| putative protein [Arabidopsis
thaliana] gi|7268943|emb|CAB81253.1| putative protein
[Arabidopsis thaliana]
Length = 420
Score = 130 bits (326), Expect = 2e-29
Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Frame = +2
Query: 68 AAPPPPP-----PSPPHSPPSQIVSGPGSSPPMKPPKAPFLKNPKKSRTSITKSSKR*FD 232
AAP PP + + S P S K + N K+ ++ I KS
Sbjct: 38 AAPAPPKFRFFSSESGENSTTATESSPTDSSDKKDLVVKDVSN-KELKSRIDKS------ 90
Query: 233 QYLKGDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPL-DDVSDREFEEDFEEAHQ 409
+ +G+E+ LP + EA+L RRL KH +TDDE+M+++ P DDV D +FE DFEEAH
Sbjct: 91 -FNEGNEDALPGVIEALLQRRLVDKHAETDDELMEKIESLPFKDDVKDEDFESDFEEAHS 149
Query: 410 TDEEIDDLYNARDVVQKRMVHDEYFNMDPKKWDEMVQDGVNHGFLKDTK*CEE 568
TDEE++DLYN+ + V ++M E+FNMD KWD M+++G+ HG L DTK CEE
Sbjct: 150 TDEELEDLYNSPEYVAEKMRKKEFFNMDDNKWDHMIREGIQHGCLTDTKQCEE 202
>pir||S23737 proline-rich protein precursor - kidney bean
gi|21046|emb|CAA42942.1| proline-rich protein [Phaseolus
vulgaris]
Length = 297
Score = 63.2 bits (152), Expect = 2e-09
Identities = 33/91 (36%), Positives = 43/91 (46%)
Frame = -1
Query: 515 PFHPTSWDPC*STHHEPSSSAPHP*HYTDHRSPHRSDAPPRNPPRTPCH*HHPEAPCGAH 336
P HP ++ P + HH PHP H+ H P P +PP P H H+P AP AH
Sbjct: 28 PLHPPTYPPANAPHH------PHPHHH--HHHPPAPAPAPLHPPSPPSHPHYPPAP--AH 77
Query: 335 PSSRHQCHHASPITSVSESPPVSTEEPPRRP 243
P + H HH S +PP+ PP +P
Sbjct: 78 PPTHHHHHHPSAPVHPPLNPPLVPVHPPLKP 108
Score = 38.9 bits (89), Expect = 0.046
Identities = 29/95 (30%), Positives = 36/95 (37%)
Frame = -1
Query: 527 PHPEPFHPTSWDPC*STHHEPSSSAPHP*HYTDHRSPHRSDAPPRNPPRTPCH*HHPEAP 348
P P P HP S P H+ P+ + P H+ H P PP NPP P H + P
Sbjct: 55 PAPAPLHPPS--PPSHPHYPPAPAHPPTHHH--HHHPSAPVHPPLNPPLVPVH-PPLKPP 109
Query: 347 CGAHPSSRHQCHHASPITSVSESPPVSTEEPPRRP 243
HP P+ PPV P + P
Sbjct: 110 VPIHPPLNPPVPVHPPV-----KPPVPVHPPVKPP 139
Score = 28.1 bits (61), Expect(2) = 0.40
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 63 PPPHHHHHH 89
PP HHHHHH
Sbjct: 78 PPTHHHHHH 86
Score = 26.6 bits (57), Expect(2) = 0.40
Identities = 12/28 (42%), Positives = 15/28 (52%)
Frame = +2
Query: 77 PPPPPSPPHSPPSQIVSGPGSSPPMKPP 160
PP P PP +PP + PP+KPP
Sbjct: 108 PPVPIHPPLNPPVPV------HPPVKPP 129
>ref|NP_177518.1| hypothetical protein; protein id: At1g73770.1 [Arabidopsis
thaliana] gi|25406293|pir||A96765 hypothetical protein
F25P22.19 [imported] - Arabidopsis thaliana
gi|12324213|gb|AAG52079.1|AC012679_17 hypothetical
protein; 70159-70900 [Arabidopsis thaliana]
Length = 191
Score = 57.4 bits (137), Expect = 1e-07
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 6/69 (8%)
Frame = +2
Query: 245 GDEEVLPLIQEAILIRRLSGKHDDTDDEMMDELRMGPLDDVS-----DREFEED-FEEAH 406
G+E+ +P + EA++IR+LSGKHDD+DDE+MD +R P++D D + E D ++
Sbjct: 80 GNEDAIPDLFEALMIRKLSGKHDDSDDEVMDVVRKYPVNDAHKVDDIDSDIESDGHGDSS 139
Query: 407 QTDEEIDDL 433
+D E DDL
Sbjct: 140 DSDIESDDL 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,978,702
Number of Sequences: 1393205
Number of extensions: 15345968
Number of successful extensions: 314016
Number of sequences better than 10.0: 3853
Number of HSP's better than 10.0 without gapping: 101309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223379
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
