Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC009449A_C01 KMC009449A_c01
(700 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61498.1| NAD+ dependent isocitrate dehydrogenase subunit 1... 183 2e-45
ref|NP_195290.1| NAD+ dependent isocitrate dehydrogenase -like p... 182 4e-45
ref|NP_195252.1| NAD+ dependent isocitrate dehydrogenase subunit... 181 9e-45
gb|AAO61647.1| NAD-dependent isocitrate dehydrogenase beta subun... 176 3e-43
emb|CAA74776.1| NAD-dependent isocitrate dehydrogenase [Nicotian... 176 4e-43
>gb|AAM61498.1| NAD+ dependent isocitrate dehydrogenase subunit 1 [Arabidopsis
thaliana]
Length = 367
Score = 183 bits (464), Expect = 2e-45
Identities = 93/106 (87%), Positives = 99/106 (92%)
Frame = -1
Query: 700 NTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGSDKILEEKIANPVALLLSSAMMLRH 521
NTAAGIAGGTGVMPGGNVGA+HAVFEQGASAGNVG DKI+ E ANPVALLLSSAMMLRH
Sbjct: 262 NTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDKIVLENKANPVALLLSSAMMLRH 321
Query: 520 LQFPAFADRLETAVEGVILEGKYRTKDLGGTSTTQEVVDAVVAALD 383
LQFP+FADRLETAV+ VI EGK+RTKDLGGTSTTQEVVDAV+A LD
Sbjct: 322 LQFPSFADRLETAVKKVIAEGKFRTKDLGGTSTTQEVVDAVIAKLD 367
>ref|NP_195290.1| NAD+ dependent isocitrate dehydrogenase -like protein; protein id:
At4g35650.1 [Arabidopsis thaliana]
gi|7431336|pir||T04670 isocitrate dehydrogenase (NAD+)
homolog F8D20.160 - Arabidopsis thaliana
gi|3367583|emb|CAA20035.1| NAD+ dependent isocitrate
dehydrogenase -like protein [Arabidopsis thaliana]
gi|7270516|emb|CAB80281.1| NAD+ dependent isocitrate
dehydrogenase-like protein [Arabidopsis thaliana]
gi|28393070|gb|AAO41969.1| putative NAD+ dependent
isocitrate dehydrogenase [Arabidopsis thaliana]
Length = 368
Score = 182 bits (462), Expect = 4e-45
Identities = 91/106 (85%), Positives = 100/106 (93%)
Frame = -1
Query: 700 NTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGSDKILEEKIANPVALLLSSAMMLRH 521
NTAAGIAGGTGVMPGGNVGAEHA+FEQGASAGNVG+DK++E+K ANPVALLLSSAMMLRH
Sbjct: 263 NTAAGIAGGTGVMPGGNVGAEHAIFEQGASAGNVGNDKMVEQKKANPVALLLSSAMMLRH 322
Query: 520 LQFPAFADRLETAVEGVILEGKYRTKDLGGTSTTQEVVDAVVAALD 383
L+FP FADRLETAV+ VI EGKYRTKDLGG TTQEVVDAV+AAL+
Sbjct: 323 LRFPTFADRLETAVKQVIKEGKYRTKDLGGDCTTQEVVDAVIAALE 368
>ref|NP_195252.1| NAD+ dependent isocitrate dehydrogenase subunit 1; protein id:
At4g35260.1, supported by cDNA: 12228., supported by
cDNA: gi_15146237, supported by cDNA: gi_16226886,
supported by cDNA: gi_1766045 [Arabidopsis thaliana]
gi|7431337|pir||T06131 isocitrate dehydrogenase (NAD)
(EC 1.1.1.41) chain 1 - Arabidopsis thaliana
gi|3080424|emb|CAA18743.1| NAD+ dependent isocitrate
dehydrogenase subunit 1 [Arabidopsis thaliana]
gi|7270478|emb|CAB80243.1| NAD+ dependent isocitrate
dehydrogenase subunit 1 [Arabidopsis thaliana]
gi|15146238|gb|AAK83602.1| AT4g35260/F23E12_180
[Arabidopsis thaliana]
gi|16226887|gb|AAL16290.1|AF428360_1
AT4g35260/F23E12_180 [Arabidopsis thaliana]
gi|22136588|gb|AAM91080.1| AT4g35260/F23E12_180
[Arabidopsis thaliana]
Length = 367
Score = 181 bits (459), Expect = 9e-45
Identities = 93/106 (87%), Positives = 98/106 (91%)
Frame = -1
Query: 700 NTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGSDKILEEKIANPVALLLSSAMMLRH 521
NTAAGIAGGTGVMPGGNVGA+HAVFEQGASAGNVG DKI+ E ANPVALLLSSAMMLRH
Sbjct: 262 NTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDKIVLENKANPVALLLSSAMMLRH 321
Query: 520 LQFPAFADRLETAVEGVILEGKYRTKDLGGTSTTQEVVDAVVAALD 383
LQFP+FADRLETAV+ VI EGK RTKDLGGTSTTQEVVDAV+A LD
Sbjct: 322 LQFPSFADRLETAVKKVIAEGKCRTKDLGGTSTTQEVVDAVIAKLD 367
>gb|AAO61647.1| NAD-dependent isocitrate dehydrogenase beta subunit [Brassica
napus]
Length = 367
Score = 176 bits (446), Expect = 3e-43
Identities = 90/106 (84%), Positives = 96/106 (89%)
Frame = -1
Query: 700 NTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGSDKILEEKIANPVALLLSSAMMLRH 521
NTAAGIAGGTGVMPGGNVGA+HAVFEQGASAGNVG D I+ E ANPVALLLSSAMMLRH
Sbjct: 262 NTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGKDSIVRENKANPVALLLSSAMMLRH 321
Query: 520 LQFPAFADRLETAVEGVILEGKYRTKDLGGTSTTQEVVDAVVAALD 383
LQFP+FADRLETAV+ VI EGK RTKDLGG STTQEVVDAV+A L+
Sbjct: 322 LQFPSFADRLETAVKKVISEGKCRTKDLGGQSTTQEVVDAVIAKLE 367
>emb|CAA74776.1| NAD-dependent isocitrate dehydrogenase [Nicotiana tabacum]
Length = 371
Score = 176 bits (445), Expect = 4e-43
Identities = 87/106 (82%), Positives = 97/106 (91%)
Frame = -1
Query: 700 NTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGSDKILEEKIANPVALLLSSAMMLRH 521
NTAAGIAGGTGVMPGGNVGA+HAVFEQGASAGNVG++KILE+K ANPVAL LSSAMMLRH
Sbjct: 266 NTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKILEQKKANPVALFLSSAMMLRH 325
Query: 520 LQFPAFADRLETAVEGVILEGKYRTKDLGGTSTTQEVVDAVVAALD 383
LQFP+FADRL+T+V+ VI EGKY TKDLGG TTQE+ DAV+A LD
Sbjct: 326 LQFPSFADRLKTSVKRVIAEGKYMTKDLGGNCTTQEITDAVIANLD 371
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,710,583
Number of Sequences: 1393205
Number of extensions: 13343114
Number of successful extensions: 49634
Number of sequences better than 10.0: 523
Number of HSP's better than 10.0 without gapping: 44603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49003
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
